DEAD DEAH box RNA helicase family protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0331411 RchiOBHm_Chr2g0132061 |
| rosa_roxburghii | Rroxscaffold_4G00316530 |
| rosa_samantha | Rh5AG156700 Rh5DG156500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 131 |
| Acc36I | ACCTGC | 1 cut(s) | 160 |
| AclWI | GGATC | 1 cut(s) | 34 |
| AcuI | CTGAAG | 1 cut(s) | 286 |
| AfaI | GTAC | 2 cut(s) | 76, 296 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 264 |
| AgsI | TTSAA | 1 cut(s) | 60 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| AlwI | GGATC | 1 cut(s) | 34 |
| Ama87I | CYCGRG | 1 cut(s) | 263 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 188, 220 |
| AseI | ATTAAT | 1 cut(s) | 174 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 143 |
| AspA2I | CCTAGG | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 2 cut(s) | 21, 256 |
| AvaI | CYCGRG | 1 cut(s) | 263 |
| AvrII | CCTAGG | 1 cut(s) | 188 |
| BbsI | GAAGAC | 2 cut(s) | 70, 275 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BfuAI | ACCTGC | 1 cut(s) | 160 |
| BlnI | CCTAGG | 1 cut(s) | 188 |
| BmeT110I | CYCGRG | 1 cut(s) | 263 |
| BpiI | GAAGAC | 2 cut(s) | 70, 275 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 264 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 264 |
| BsgI | GTGCAG | 1 cut(s) | 138 |
| BsiHKCI | CYCGRG | 1 cut(s) | 263 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 264 |
| BsoBI | CYCGRG | 1 cut(s) | 263 |
| Bsp143I | GATC | 1 cut(s) | 26 |
| BspMAI | CTGCAG | 1 cut(s) | 286 |
| BspMI | ACCTGC | 1 cut(s) | 160 |
| BspPI | GGATC | 1 cut(s) | 34 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 1 cut(s) | 26 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 1 cut(s) | 159 |
| BstKTI | GATC | 1 cut(s) | 29 |
| BstMBI | GATC | 1 cut(s) | 26 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstV2I | GAAGAC | 2 cut(s) | 70, 275 |
| BtsI | GCAGTG | 1 cut(s) | 279 |
| BtsIMutI | CAGTG | 2 cut(s) | 155, 279 |
| BveI | ACCTGC | 1 cut(s) | 160 |
| Csp6I | GTAC | 2 cut(s) | 75, 295 |
| CviJI | RGCY | 2 cut(s) | 96, 142 |
| CviKI_1 | RGCY | 2 cut(s) | 96, 142 |
| CviQI | GTAC | 2 cut(s) | 75, 295 |
| DpnI | GATC | 1 cut(s) | 28 |
| DpnII | GATC | 1 cut(s) | 26 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 131 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 131 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco57I | CTGAAG | 1 cut(s) | 286 |
| Eco88I | CYCGRG | 1 cut(s) | 263 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaiI | YATR | 4 cut(s) | 93, 99, 276, 293 |
| FspBI | CTAG | 1 cut(s) | 189 |
| HphI | GGTGA | 2 cut(s) | 21, 256 |
| Hpy188I | TCNGA | 2 cut(s) | 165, 305 |
| Hpy188III | TCNNGA | 4 cut(s) | 60, 136, 217, 265 |
| HpyAV | CCTTC | 1 cut(s) | 66 |
| HpyCH4III | ACNGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 3 cut(s) | 15, 155, 284 |
| Kzo9I | GATC | 1 cut(s) | 26 |
| LpnPI | CCDG | 5 cut(s) | 9, 59, 81, 165, 227 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MaeIII | GTNAC | 2 cut(s) | 194, 244 |
| MalI | GATC | 1 cut(s) | 28 |
| MboI | GATC | 1 cut(s) | 26 |
| MboII | GAAGA | 2 cut(s) | 75, 280 |
| MluCI | AATT | 3 cut(s) | 119, 167, 203 |
| MmeI | TCCRAC | 1 cut(s) | 172 |
| MroXI | GAANNNNTTC | 1 cut(s) | 143 |
| MseI | TTAA | 2 cut(s) | 174, 234 |
| NdeII | GATC | 1 cut(s) | 26 |
| NmuCI | GTSAC | 2 cut(s) | 194, 244 |
| PdmI | GAANNNNTTC | 1 cut(s) | 143 |
| PshBI | ATTAAT | 1 cut(s) | 174 |
| PstI | CTGCAG | 1 cut(s) | 286 |
| RsaI | GTAC | 2 cut(s) | 76, 296 |
| RsaNI | GTAC | 2 cut(s) | 75, 295 |
| SaqAI | TTAA | 2 cut(s) | 174, 234 |
| Sau3AI | GATC | 1 cut(s) | 26 |
| SetI | ASST | 4 cut(s) | 58, 70, 144, 154 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| Sse9I | AATT | 3 cut(s) | 119, 167, 203 |
| SspMI | CTAG | 1 cut(s) | 189 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaaI | ACNGT | 1 cut(s) | 159 |
| TasI | AATT | 3 cut(s) | 119, 167, 203 |
| TatI | WGTACW | 2 cut(s) | 74, 294 |
| Tru1I | TTAA | 2 cut(s) | 174, 234 |
| Tru9I | TTAA | 2 cut(s) | 174, 234 |
| TscAI | CASTG | 2 cut(s) | 162, 286 |
| TseFI | GTSAC | 2 cut(s) | 194, 244 |
| Tsp45I | GTSAC | 2 cut(s) | 194, 244 |
| TspRI | CASTG | 2 cut(s) | 162, 286 |
| VspI | ATTAAT | 1 cut(s) | 174 |
| XmaJI | CCTAGG | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 143 |
| XspI | CTAG | 1 cut(s) | 189 |