RchiOBHm_Chr1g0333781
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024758
Physical Location & Seq
Reverse (-)
25934546 .. 25935629
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56256

Sequence Viewer

Length: 288 bp
ATGAGCTGCGGCGGCTTCACAGTTCCACCGGGATATGGATTCCATCCCACCGACGAGAAGCTGCTTAGTGACTTGGAGGAGAAGAATCGGTGCAAGGACTCCGAGATCACCACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCACGAGTTACCAGCAAATATCTTGAGTGGACGTAGGCTAGGCAGGAAATTTGCCGAATCACTTAAATCTCATGTCAATTGTATTTCATCCTTGTTTGTTTATTCTGCTTTATTGTGGTATTGTTGCGGATGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

95

Amino Acids

10.6

Weight (kDa)

6.04

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 56 6.1e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024758)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333781 RchiOBHm_Chr1g0361571
rosa_multiflora Rmu_sc0033065.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 12, 276
AcsI RAATTY 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 2 cut(s) 6, 61
AluI AGCT 2 cut(s) 6, 61
ApeKI GCWGC 2 cut(s) 6, 61
ApoI RAATTY 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 100
BauI CACGAG 2 cut(s) 143, 152
BbvI GCAGC 1 cut(s) 48
BccI CCATC 2 cut(s) 51, 122
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 188
BisI GCNGC 4 cut(s) 7, 10, 13, 62
BlsI GCNGC 4 cut(s) 8, 11, 14, 63
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 4 cut(s) 43, 117, 236, 284
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 48
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 35
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 3 cut(s) 9, 12, 276
BspDI ATCGAT 1 cut(s) 129
BssMI GATC 1 cut(s) 105
BssSI CACGAG 2 cut(s) 143, 152
Bst2BI CACGAG 2 cut(s) 143, 152
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 4 cut(s) 43, 117, 236, 284
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 4 cut(s) 43, 117, 236, 284
Cac8I GCNNGC 1 cut(s) 140
ClaI ATCGAT 1 cut(s) 129
CviAII CATG 1 cut(s) 221
CviJI RGCY 5 cut(s) 6, 15, 61, 148, 187
CviKI_1 RGCY 5 cut(s) 6, 15, 61, 148, 187
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 36, 222
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 7, 10, 13, 62
FokI GGATG 3 cut(s) 30, 104, 223
Fsp4HI GCNGC 4 cut(s) 7, 10, 13, 62
FspBI CTAG 1 cut(s) 188
GluI GCNGC 4 cut(s) 7, 10, 13, 62
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 224
HinfI GANTC 4 cut(s) 39, 85, 98, 206
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 152, 172
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 93, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 4 cut(s) 42, 135, 174, 178
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 68, 156
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 226
MluCI AATT 2 cut(s) 197, 226
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 70, 159
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 30
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 3 cut(s) 39, 85, 206
PkrI GCNGC 4 cut(s) 8, 11, 14, 63
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 7, 10, 13, 62
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 30
SetI ASST 3 cut(s) 8, 63, 184
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 197, 226
SsiI CCGC 3 cut(s) 9, 12, 276
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 197, 226
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 3 cut(s) 39, 85, 206
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 6, 61
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 1 cut(s) 197
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.