Rmu_sc0033065.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033065.1
OG0024758
Physical Location & Seq
Reverse (-)
2 .. 209
208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033065.1_g000001.1.cds

Sequence Viewer

Length: 208 bp
atgagctgccaaattttcccaattccaccggaataccgattccgtcccaccaaaaaggagctgctgtgtgaccacttggagaagaagaatcagcgcaaggactcccaaagcatgtccatcatccctgaaatcgatctgtgcaagcacgagcctcgtgagctaccaggtgatccatctccggaaccagaacaccatcaatttcaattat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

69

Amino Acids

8.19

Weight (kDa)

6.04

Isoelectric Point (pI)

72.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024758)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333781 RchiOBHm_Chr1g0361571
rosa_multiflora Rmu_sc0033065.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 178
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 12
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 3 cut(s) 6, 61, 160
AluI AGCT 3 cut(s) 6, 61, 160
AlwI GGATC 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 6, 61
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 179
BauI CACGAG 2 cut(s) 146, 153
BbvI GCAGC 1 cut(s) 48
BccI CCATC 3 cut(s) 125, 181, 201
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 165
BisI GCNGC 2 cut(s) 7, 62
BlsI GCNGC 2 cut(s) 8, 63
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 132
BsaWI WCCGGW 2 cut(s) 28, 178
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 132
BseGI GGATG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 48
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 2 cut(s) 29, 179
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 2 cut(s) 133, 169
BspDI ATCGAT 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 1 cut(s) 164
BssMI GATC 2 cut(s) 133, 169
BssSI CACGAG 2 cut(s) 146, 153
Bst2BI CACGAG 2 cut(s) 146, 153
Bst2UI CCWGG 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 2 cut(s) 136, 172
BstMBI GATC 2 cut(s) 133, 169
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 132
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 163
CviAII CATG 1 cut(s) 112
CviJI RGCY 4 cut(s) 6, 61, 151, 160
CviKI_1 RGCY 4 cut(s) 6, 61, 151, 160
DpnI GATC 2 cut(s) 135, 171
DpnII GATC 2 cut(s) 133, 169
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 7, 62
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 7, 62
GlaI GCGC 1 cut(s) 95
GluI GCNGC 2 cut(s) 7, 62
HapII CCGG 2 cut(s) 29, 179
HhaI GCGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 3 cut(s) 39, 88, 101
HpaII CCGG 2 cut(s) 29, 179
HphI GGTGA 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 155, 179
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 2 cut(s) 133, 169
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 42, 138, 150, 177, 192, 198
Lsp1109I GCAGC 1 cut(s) 48
MabI ACCWGGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 135, 171
MboI GATC 2 cut(s) 133, 169
MboII GAAGA 2 cut(s) 94, 97
MluCI AATT 4 cut(s) 12, 21, 197, 203
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 162
MroI TCCGGA 1 cut(s) 178
MspI CCGG 2 cut(s) 29, 179
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 2 cut(s) 133, 169
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 115
PfeI GAWTC 2 cut(s) 39, 88
PkrI GCNGC 2 cut(s) 8, 63
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 183
SatI GCNGC 2 cut(s) 7, 62
Sau3AI GATC 2 cut(s) 133, 169
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 165
SetI ASST 4 cut(s) 8, 63, 162, 169
SexAI ACCWGGT 1 cut(s) 163
Sse9I AATT 4 cut(s) 12, 21, 197, 203
StyD4I CCNGG 1 cut(s) 163
TaqI TCGA 1 cut(s) 132
TasI AATT 4 cut(s) 12, 21, 197, 203
TfiI GAWTC 2 cut(s) 39, 88
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 6, 61
Tsp45I GTSAC 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 32
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.