RchiOBHm_Chr1g0337931
HSP70 Family

heat- shock

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024745
Physical Location & Seq
Reverse (-)
29900335 .. 29900903
569 bp
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UTR
Exon/CDS
Intron
PRQ56580

Sequence Viewer

Length: 366 bp
ATGAGGAAGTTGACGGGGAAGGAACCAAATGTTACAGTCAATACTGATGAAGTTGTTGACCTTGGTGCTACAGTTCAGGCTGGTGTATTAGCTGGAGATGTAAGCGACATTGTATTGTTGGATGTGATACCACTGTCAGTGGGTTTGGAGACCCTTGGTGGTGTCATGACAAAGATCATCCCAAGAAACACCACTCTACCTACCTCTAATTCAGAGGTATTCTCAACGGCTGCGGATGGGCAGACGAGTGTAGAGATCAATGTTCTTCAAGGGAGGGAGAATTTGTTAGAGATAACAAATCTCTTGGTAGCTTCCGTCTGGATGGTATTCCGCTTGCACCACGTGGGGTTCCTCAAATTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

121

Amino Acids

12.95

Weight (kDa)

5.0

Isoelectric Point (pI)

9.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 102 2.3e-35 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024745)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0337931 RchiOBHm_Chr1g0339371
rosa_laevigata RLG00000029229

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 331
AcsI RAATTY 1 cut(s) 280
AcvI CACGTG 1 cut(s) 343
AdeI CACNNNGTG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 269, 361
AluBI AGCT 2 cut(s) 92, 311
AluI AGCT 2 cut(s) 92, 311
Alw26I GTCTC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BbrPI CACGTG 1 cut(s) 343
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 230, 316
BceAI ACGGC 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 24, 350
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 61, 154
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
BseDI CCNNGG 2 cut(s) 61, 154
BseGI GGATG 4 cut(s) 127, 177, 241, 327
BseXI GCAGC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 174, 255
BspACI CCGC 2 cut(s) 233, 331
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 24, 350
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 61, 154
BssMI GATC 2 cut(s) 174, 255
BssT1I CCWWGG 2 cut(s) 61, 154
Bst4CI ACNGT 3 cut(s) 37, 73, 135
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 335
BstF5I GGATG 4 cut(s) 127, 177, 241, 327
BstKTI GATC 2 cut(s) 177, 258
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 174, 255
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 217
BtsCI GGATG 4 cut(s) 127, 177, 241, 327
BtsIMutI CAGTG 2 cut(s) 131, 144
Cac8I GCNNGC 1 cut(s) 335
CciI TCATGA 1 cut(s) 165
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 80, 92, 230, 311
CviKI_1 RGCY 4 cut(s) 80, 92, 230, 311
DpnI GATC 2 cut(s) 176, 257
DpnII GATC 2 cut(s) 174, 255
DraIII CACNNNGTG 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 61, 154
Eco31I GGTCTC 1 cut(s) 143
Eco72I CACGTG 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 61, 154
ErhI CCWWGG 2 cut(s) 61, 154
FaeI CATG 1 cut(s) 169
FaiI YATR 1 cut(s) 167
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 4 cut(s) 134, 164, 248, 334
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 2 cut(s) 12, 58
HindII GTYRAC 2 cut(s) 12, 58
Hpy166II GTNNAC 2 cut(s) 12, 58
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 166, 319
Hpy8I GTNNAC 2 cut(s) 12, 58
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 3 cut(s) 37, 73, 135
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 337
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 174, 255
LpnPI CCDG 4 cut(s) 62, 66, 78, 304
Lsp1109I GCAGC 1 cut(s) 217
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 176, 257
MboI GATC 2 cut(s) 174, 255
MboII GAAGA 1 cut(s) 257
MluCI AATT 3 cut(s) 208, 280, 356
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 208, 214, 267, 362
NdeII GATC 2 cut(s) 174, 255
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 24, 350
PagI TCATGA 1 cut(s) 165
PkrI GCNGC 1 cut(s) 232
PmaCI CACGTG 1 cut(s) 343
PmlI CACGTG 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 343
PspCI CACGTG 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 24, 350
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 174, 255
SetI ASST 7 cut(s) 63, 94, 202, 206, 219, 313, 345
SfcI CTRYAG 1 cut(s) 69
Sse9I AATT 3 cut(s) 208, 280, 356
SsiI CCGC 2 cut(s) 233, 331
StyI CCWWGG 2 cut(s) 61, 154
TaaI ACNGT 3 cut(s) 37, 73, 135
TaiI ACGT 1 cut(s) 345
TasI AATT 3 cut(s) 208, 280, 356
TscAI CASTG 2 cut(s) 138, 144
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 2 cut(s) 138, 144
XapI RAATTY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.