Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024745

Physical Location & Seq

Genomic Coordinates Reverse (-)

30717426 .. 30718132

Gene Structure 707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGGAAGTTGACGGGGAAGGAACCAAATGTTACAGTCAATACTGATGAAGTTGTTGACCTTGGTGCTACAGTTCAGGCTGGTGTATTAGCTGGAGATGTAAGCGACATTGTATTGTTGGATGTGATACCACTGTCAGTGGGTTTGGAGACCCTTGGTGGTGTCATGACAAAGATCATCCCAAGAAACACCACTCTACCTACCTCTAATTCAGAGGTATTCTCAACGGCTGCGGATGGGCAGACGAGTGTAGAGATCAATGTTCTTCAAGGGGAGGGAGAATTTGTTAGAGATAACAAATCTCTTGGTAGCTTCCGTCTGGATGGTATTCCGCTTGCACCACGTGGGGTTCCTCAAATTGAAGTGAAGTTTGACATTGATGCCAATGGTATACTCTCCGTCGCTACTATTGACAAGGGCACAAACAAACAGCAGGATATTACTATTACTGGTGCTAGCGCCCTGCCTAATGATGAGGTACATACTGTATATGTAGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

167

Amino Acids

17.54

Weight (kDa)

4.39

Isoelectric Point (pI)

17.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 162	1.8e-63	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337931 RchiOBHm_Chr1g0339371
rosa_laevigata	RLG00000029229

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	391
AciI	CCGC	2 cut(s)	233, 332
AcsI	RAATTY	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	269, 362
AluBI	AGCT	2 cut(s)	92, 312
AluI	AGCT	2 cut(s)	92, 312
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	461
AsuNHI	GCTAGC	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
BbrPI	CACGTG	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	230, 317
BceAI	ACGGC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	462
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	24, 351
BmsI	GCATC	1 cut(s)	370
BmtI	GCTAGC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	61, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bse1I	ACTGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	61, 154
BseGI	GGATG	4 cut(s)	127, 177, 241, 328
BseNI	ACTGG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	174, 255
BspACI	CCGC	2 cut(s)	233, 332
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	24, 351
BspOI	GCTAGC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	61, 154
BssMI	GATC	2 cut(s)	174, 255
BssNAI	GTATAC	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	61, 154
Bst1107I	GTATAC	1 cut(s)	392
Bst4CI	ACNGT	4 cut(s)	37, 73, 135, 487
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	336, 457
BstF5I	GGATG	4 cut(s)	127, 177, 241, 328
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	2 cut(s)	177, 258
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	174, 255
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	392
BtsCI	GGATG	4 cut(s)	127, 177, 241, 328
BtsIMutI	CAGTG	2 cut(s)	131, 144
Cac8I	GCNNGC	2 cut(s)	336, 457
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	4 cut(s)	80, 92, 230, 312
CviKI_1	RGCY	4 cut(s)	80, 92, 230, 312
CviQI	GTAC	1 cut(s)	479
DpnI	GATC	2 cut(s)	176, 257
DpnII	GATC	2 cut(s)	174, 255
DraIII	CACNNNGTG	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	61, 154
Eco31I	GGTCTC	1 cut(s)	143
Eco72I	CACGTG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	61, 154
ErhI	CCWWGG	2 cut(s)	61, 154
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	167, 392, 483, 490, 492
FatI	CATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	4 cut(s)	134, 164, 248, 335
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	462
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	2 cut(s)	12, 58
HindII	GTYRAC	2 cut(s)	12, 58
Hpy166II	GTNNAC	3 cut(s)	12, 58, 392
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	166, 320
Hpy8I	GTNNAC	3 cut(s)	12, 58, 392
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	4 cut(s)	37, 73, 135, 487
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	174, 255
LpnPI	CCDG	7 cut(s)	62, 66, 78, 305, 419, 435, 476
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	176, 257
MboI	GATC	2 cut(s)	174, 255
MboII	GAAGA	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	4 cut(s)	208, 281, 357, 499
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	5 cut(s)	208, 214, 268, 363, 469
MseI	TTAA	1 cut(s)	498
NdeII	GATC	2 cut(s)	174, 255
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	24, 351
PagI	TCATGA	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	232
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	344
PspCI	CACGTG	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	24, 351
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	174, 255
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	8 cut(s)	63, 94, 202, 206, 219, 314, 346, 480
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	69
Sse9I	AATT	4 cut(s)	208, 281, 357, 499
SsiI	CCGC	2 cut(s)	233, 332
SspMI	CTAG	1 cut(s)	456
StyI	CCWWGG	2 cut(s)	61, 154
TaaI	ACNGT	4 cut(s)	37, 73, 135, 487
TaiI	ACGT	1 cut(s)	346
TasI	AATT	4 cut(s)	208, 281, 357, 499
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	138, 144
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	2 cut(s)	305, 388
TspRI	CASTG	2 cut(s)	138, 144
XapI	RAATTY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.