Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0024745

Physical Location & Seq

Genomic Coordinates Reverse (-)

34887038 .. 34888146

Gene Structure 1109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACTTCAAATGTCCAAGAAGTATCCGGTAGGTTCTTCGACTACATTGTGGTTAGAGGAGGCACTACCAGCTACCCTCTAGCTGCAACCTTGTCTGAGAAATTCTCAGTGCTGTTGGTGGAACGAGGTGGCTCGCCTTACAGAGACCCCTTCATCTTAGAGGAGCAGTACTTCAGATTCCCATTTCTCCAAACTAATGAATGCTTGATAGCTATGAACTATTGTTTTGAAAATTCCTTGAGGGATGCAAAGCTCTCCTTCAAAGACCTAGATGAGGTAATGCTTGTTGGTGGTTCAACACGTATACCTGCTGTCCAGGAGCTTGTCAAGAAGTTGATGAGGAAGGAACCAAATGTTACAGTGAATACAGTCAATCCTGATGAAGTTGTTGCCCTTGGTGCTTCAGTTCAGGCTGGTGTATTAGCTGGAGATGTAAGCGACATTGTATTGTTGGATGTGACACCACTGTCACTGGGTTTGGAGACCCTTGGTGGTGTCATGACAAAGATCTTCCCAAGTAACACCACTCTACCGACCTCTAAGTCAGAGGTATTCTCAACGGCTGCGGATGGGCAGACAAGTGTAGAGATCAATGTTCTTCAAGGGGAGGGAGAATTTGTTAGAGACAACAAATCTCTTGGTATCTTCCGTCTGGATGGTATTCCGCCTGCACCACGTGGGGTTCCTCAAATTGAAGTGAAGTTTGACATTGATGCCAATGGTATACTCTCCGTCGCTACTATTGACAAGGGCACAAACAAACAGCAGGATATTACCATTACTGGTGCTAGCGCCATGCCTAATGATGAGGTACGTACTGTATATGTAGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

279

Amino Acids

30.15

Weight (kDa)

4.62

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	72 - 273	3.8e-81	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337931 RchiOBHm_Chr1g0339371
rosa_laevigata	RLG00000029229

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	466, 541
Acc36I	ACCTGC	1 cut(s)	316
AccI	GTMKAC	2 cut(s)	304, 724
AciI	CCGC	2 cut(s)	566, 665
AcsI	RAATTY	3 cut(s)	101, 232, 614
AcuI	CTGAAG	2 cut(s)	157, 387
AcvI	CACGTG	1 cut(s)	677
AdeI	CACNNNGTG	1 cut(s)	677
AfaI	GTAC	3 cut(s)	170, 813, 817
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	6 cut(s)	9, 230, 262, 297, 602, 695
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	6 cut(s)	72, 83, 212, 253, 322, 425
AluI	AGCT	6 cut(s)	72, 83, 212, 253, 322, 425
Alw26I	GTCTC	3 cut(s)	138, 476, 618
ApeKI	GCWGC	2 cut(s)	83, 563
ApoI	RAATTY	3 cut(s)	101, 232, 614
AspLEI	GCGC	1 cut(s)	794
AsuNHI	GCTAGC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	755
BbrPI	CACGTG	1 cut(s)	677
BbvI	GCAGC	2 cut(s)	70, 550
BccI	CCATC	2 cut(s)	563, 650
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	3 cut(s)	138, 476, 618
BfaI	CTAG	3 cut(s)	80, 269, 789
BfoI	RGCGCY	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	2 cut(s)	84, 564
BlsI	GCNGC	2 cut(s)	85, 565
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	348, 684
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	2 cut(s)	235, 703
BmtI	GCTAGC	1 cut(s)	792
BmuI	ACTGGG	1 cut(s)	482
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 539, 571
BpmI	CTGGAG	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	259
BsaAI	YACGTR	3 cut(s)	302, 677, 815
BsaI	GGTCTC	2 cut(s)	138, 476
BsaJI	CCNNGG	2 cut(s)	394, 487
BsaWI	WCCGGW	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	477, 787
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	394, 487
BseGI	GGATG	4 cut(s)	250, 460, 574, 661
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	87, 120
BseNI	ACTGG	2 cut(s)	477, 787
BseRI	GAGGAG	2 cut(s)	72, 176
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	2 cut(s)	70, 550
BsgI	GTGCAG	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	3 cut(s)	138, 476, 618
BsmI	GAATGC	1 cut(s)	206
Bso31I	GGTCTC	2 cut(s)	138, 476
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	2 cut(s)	507, 588
BspACI	CCGC	2 cut(s)	566, 665
BspCNI	CTCAG	2 cut(s)	88, 119
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	348, 684
BspMI	ACCTGC	1 cut(s)	316
BspOI	GCTAGC	1 cut(s)	792
BspTNI	GGTCTC	2 cut(s)	138, 476
BsrI	ACTGG	2 cut(s)	477, 787
BssECI	CCNNGG	2 cut(s)	394, 487
BssMI	GATC	2 cut(s)	507, 588
BssNAI	GTATAC	2 cut(s)	305, 725
BssT1I	CCWWGG	2 cut(s)	394, 487
Bst1107I	GTATAC	2 cut(s)	305, 725
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	4 cut(s)	361, 370, 468, 820
BstBAI	YACGTR	3 cut(s)	302, 677, 815
BstC8I	GCNNGC	3 cut(s)	134, 669, 790
BstDEI	CTNAG	4 cut(s)	96, 106, 157, 540
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	4 cut(s)	250, 460, 574, 661
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	794
BstKTI	GATC	2 cut(s)	510, 591
BstMAI	GTCTC	3 cut(s)	138, 476, 618
BstMBI	GATC	2 cut(s)	507, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 398
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	755
BstSNI	TACGTA	1 cut(s)	815
BstV1I	GCAGC	2 cut(s)	70, 550
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BstZ17I	GTATAC	2 cut(s)	305, 725
BsuI	GTATCC	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	250, 460, 574, 661
BtsIMutI	CAGTG	4 cut(s)	114, 366, 464, 470
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	134, 669, 790
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	794
Csp6I	GTAC	3 cut(s)	169, 812, 816
CviAII	CATG	2 cut(s)	499, 796
CviJI	RGCY	9 cut(s)	72, 83, 132, 212, 253, 322, 413, 425, 563
CviKI_1	RGCY	9 cut(s)	72, 83, 132, 212, 253, 322, 413, 425, 563
CviQI	GTAC	3 cut(s)	169, 812, 816
DdeI	CTNAG	4 cut(s)	96, 106, 157, 540
DpnI	GATC	2 cut(s)	509, 590
DpnII	GATC	2 cut(s)	507, 588
DraIII	CACNNNGTG	1 cut(s)	677
DrdI	GACNNNNNNGTC	2 cut(s)	466, 541
DseDI	GACNNNNNNGTC	2 cut(s)	466, 541
EciI	GGCGGA	1 cut(s)	654
Eco105I	TACGTA	1 cut(s)	815
Eco130I	CCWWGG	2 cut(s)	394, 487
Eco31I	GGTCTC	2 cut(s)	138, 476
Eco57I	CTGAAG	2 cut(s)	157, 387
Eco72I	CACGTG	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	394, 487
ErhI	CCWWGG	2 cut(s)	394, 487
FaeI	CATG	2 cut(s)	502, 799
FaiI	YATR	7 cut(s)	215, 305, 500, 725, 797, 823, 825
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	2 cut(s)	498, 795
FblI	GTMKAC	2 cut(s)	304, 724
Fnu4HI	GCNGC	2 cut(s)	84, 564
FokI	GGATG	4 cut(s)	257, 467, 581, 668
Fsp4HI	GCNGC	2 cut(s)	84, 564
FspBI	CTAG	3 cut(s)	80, 269, 789
GlaI	GCGC	1 cut(s)	793
GluI	GCNGC	2 cut(s)	84, 564
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	795
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	794
Hin1II	CATG	2 cut(s)	502, 799
Hin6I	GCGC	1 cut(s)	792
HinP1I	GCGC	1 cut(s)	792
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	305, 725
Hpy188I	TCNGA	3 cut(s)	97, 176, 547
Hpy188III	TCNNGA	4 cut(s)	328, 377, 499, 653
Hpy8I	GTNNAC	2 cut(s)	305, 725
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	3 cut(s)	160, 268, 337
HpyCH4III	ACNGT	4 cut(s)	361, 370, 468, 820
HpyCH4IV	ACGT	3 cut(s)	301, 676, 814
HpyCH4V	TGCA	3 cut(s)	86, 248, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 398
HpyF3I	CTNAG	4 cut(s)	96, 106, 157, 540
HpySE526I	ACGT	3 cut(s)	301, 676, 814
Hsp92II	CATG	2 cut(s)	502, 799
HspAI	GCGC	1 cut(s)	792
Kzo9I	GATC	2 cut(s)	507, 588
LmnI	GCTCC	2 cut(s)	163, 319
Lsp1109I	GCAGC	2 cut(s)	70, 550
LweI	GCATC	2 cut(s)	235, 703
MaeI	CTAG	3 cut(s)	80, 269, 789
MaeII	ACGT	3 cut(s)	301, 676, 814
MaeIII	GTNAC	4 cut(s)	355, 457, 468, 518
MalI	GATC	2 cut(s)	509, 590
MboI	GATC	2 cut(s)	507, 588
MboII	GAAGA	4 cut(s)	28, 502, 590, 637
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	5 cut(s)	101, 232, 614, 690, 832
MmeI	TCCRAC	1 cut(s)	432
MseI	TTAA	1 cut(s)	831
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	69, 398
NdeII	GATC	2 cut(s)	507, 588
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	2 cut(s)	502, 799
NlaIV	GGNNCC	2 cut(s)	348, 684
NmuCI	GTSAC	2 cut(s)	457, 468
PagI	TCATGA	1 cut(s)	498
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	85, 565
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
Ppu21I	YACGTR	3 cut(s)	302, 677, 815
Psp6I	CCWGG	1 cut(s)	315
PspCI	CACGTG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	348, 684
PsuI	RGATCY	1 cut(s)	507
RsaI	GTAC	3 cut(s)	170, 813, 817
RsaNI	GTAC	3 cut(s)	169, 812, 816
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	2 cut(s)	84, 564
Sau3AI	GATC	2 cut(s)	507, 588
ScaI	AGTACT	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	2 cut(s)	235, 703
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
SnaBI	TACGTA	1 cut(s)	815
Sse9I	AATT	5 cut(s)	101, 232, 614, 690, 832
SsiI	CCGC	2 cut(s)	566, 665
SspMI	CTAG	3 cut(s)	80, 269, 789
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	394, 487
TaaI	ACNGT	4 cut(s)	361, 370, 468, 820
TaiI	ACGT	3 cut(s)	304, 679, 817
TaqI	TCGA	1 cut(s)	39
TasI	AATT	5 cut(s)	101, 232, 614, 690, 832
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	4 cut(s)	114, 366, 471, 477
TseFI	GTSAC	2 cut(s)	457, 468
TseI	GCWGC	2 cut(s)	83, 563
Tsp45I	GTSAC	2 cut(s)	457, 468
TspDTI	ATGAA	4 cut(s)	142, 213, 230, 396
TspGWI	ACGGA	2 cut(s)	638, 721
TspRI	CASTG	4 cut(s)	114, 366, 471, 477
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	3 cut(s)	101, 232, 614
XmiI	GTMKAC	2 cut(s)	304, 724
XspI	CTAG	3 cut(s)	80, 269, 789
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.