Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024724

Physical Location & Seq

Genomic Coordinates Reverse (-)

31021982 .. 31022509

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACCATATCGCCCTCAAACCAATTAAAGAGTTACAATGACTGCCATCAACATCAATCTCTCTCGTTTCGATCTCTCTCTCTCTCTCTCCCTTCTCTCTCCTCCCAACCTGAAACTCTCTCTCTCTCTCTCGGTGAAAGCTCAGTAACCCACCGCATGGCTCTTCTATTTGTCTCCGCCCTCTGCTTCTGCCACGAAAACGGCTTCGGTCACCGCAACGTCAAGCCTCAGAATCTCCTCCTCGAAGGCACCGGAAACCTGAAGGTCTCCGATTTCGAACCCTCTGACCTGCCGAAGCAGCTCAAGGACGGCCTCCTCCACACGGCTTGCAGGACGCCGGAGGTTTTGTACAGGGTCGGGTGCGACAGATCCAAGGCCGACGCGTGGTCCTGCGGCGTCATCCTCTCCGTTTTCCTTGCGCACGACGCCGACTCTCTCTCTCCCCCGTCACCGCCTGGCTCTGCCACCATCGCCGTCTTCATGCTCTCCGCAGCTAGGCTCGTCGCAGAGGAGAAAGGAGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 ko04113 ko04138 map03060 map03070 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

175

Amino Acids

18.95

Weight (kDa)

6.36

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 140	8.6e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024724)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339601
rosa_laevigata	RLG00000034434
rosa_multiflora	Rmu_ssc0000009.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccII	CGCG	1 cut(s)	383
AciI	CCGC	6 cut(s)	154, 177, 214, 393, 452, 489
AclWI	GGATC	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	3 cut(s)	335, 396, 426
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	157, 322, 384, 495
AflIII	ACRYGT	1 cut(s)	381
AhdI	GACNNNNNGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	3 cut(s)	141, 301, 494
AluI	AGCT	3 cut(s)	141, 301, 494
Alw26I	GTCTC	2 cut(s)	178, 271
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	2 cut(s)	310, 375
ApeKI	GCWGC	2 cut(s)	298, 491
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	3 cut(s)	146, 203, 441
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	310, 503
BccI	CCATC	2 cut(s)	54, 476
BceAI	ACGGC	4 cut(s)	217, 325, 339, 458
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	178, 271
BfaI	CTAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	297
BisI	GCNGC	3 cut(s)	299, 394, 492
BlsI	GCNGC	3 cut(s)	300, 395, 493
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	469
Bpu14I	TTCGAA	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	287
BsaHI	GRCGYC	3 cut(s)	335, 396, 426
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 322, 384, 495
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	4 cut(s)	157, 322, 384, 495
BseMII	CTCAG	2 cut(s)	156, 242
BseRI	GAGGAG	5 cut(s)	91, 227, 230, 305, 524
BseXI	GCAGC	2 cut(s)	310, 503
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	2 cut(s)	312, 377
BshNI	GGYRCC	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	252, 338
BslI	CCNNNNNNNGG	4 cut(s)	157, 322, 384, 495
BsmAI	GTCTC	2 cut(s)	178, 271
BsnI	GGCC	2 cut(s)	312, 377
Bso31I	GGTCTC	1 cut(s)	271
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	71, 368
BspACI	CCGC	6 cut(s)	154, 177, 214, 393, 452, 489
BspANI	GGCC	2 cut(s)	312, 377
BspCNI	CTCAG	2 cut(s)	155, 241
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	71, 368
BssNI	GRCGYC	3 cut(s)	335, 396, 426
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	3 cut(s)	335, 396, 426
BstAUI	TGTACA	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	142, 228
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	74, 371
BstMAI	GTCTC	2 cut(s)	178, 271
BstMBI	GATC	2 cut(s)	71, 368
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 425, 470
BstNI	CCWGG	1 cut(s)	456
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	310, 503
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	312, 377
BtgZI	GCGATG	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	4 cut(s)	343, 385, 389, 434
Csp6I	GTAC	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	2 cut(s)	157, 481
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	142, 228
DpnI	GATC	2 cut(s)	73, 370
DpnII	GATC	2 cut(s)	71, 368
DriI	GACNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	160, 484
FaiI	YATR	3 cut(s)	8, 158, 482
FatI	CATG	2 cut(s)	156, 480
Fnu4HI	GCNGC	3 cut(s)	299, 394, 492
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	3 cut(s)	299, 394, 492
FspBI	CTAG	1 cut(s)	495
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	3 cut(s)	299, 394, 492
HaeIII	GGCC	2 cut(s)	312, 377
HapII	CCGG	2 cut(s)	252, 338
HgaI	GACGC	4 cut(s)	343, 385, 389, 434
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	3 cut(s)	335, 396, 426
Hin1II	CATG	2 cut(s)	160, 484
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	2 cut(s)	232, 431
HpaII	CCGG	2 cut(s)	252, 338
HphI	GGTGA	3 cut(s)	146, 203, 441
Hpy188I	TCNGA	3 cut(s)	231, 271, 286
Hpy99I	CGWCG	3 cut(s)	383, 428, 506
HpyAV	CCTTC	3 cut(s)	102, 239, 256
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 425, 470
HpyF3I	CTNAG	2 cut(s)	142, 228
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	3 cut(s)	335, 396, 426
Hsp92II	CATG	2 cut(s)	160, 484
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	71, 368
LguI	GCTCTTC	1 cut(s)	168
Lsp1109I	GCAGC	2 cut(s)	310, 503
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	32, 145, 209, 447
MalI	GATC	2 cut(s)	73, 370
MboI	GATC	2 cut(s)	71, 368
MboII	GAAGA	2 cut(s)	155, 469
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	1 cut(s)	23
MluI	ACGCGT	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	26
MspI	CCGG	2 cut(s)	252, 338
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	298, 425, 470
NdeII	GATC	2 cut(s)	71, 368
NlaIII	CATG	2 cut(s)	160, 484
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	209, 447
NsbI	TGCGCA	1 cut(s)	420
NspV	TTCGAA	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	300, 395, 493
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	299, 394, 492
Sau3AI	GATC	2 cut(s)	71, 368
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	456
SetI	ASST	9 cut(s)	112, 143, 222, 261, 267, 291, 303, 345, 496
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	6 cut(s)	154, 177, 214, 393, 452, 489
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	70, 243, 276
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	2 cut(s)	209, 447
TseI	GCWGC	2 cut(s)	298, 491
Tsp45I	GTSAC	2 cut(s)	209, 447
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	387
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.