Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000009.1

Orthogroup ID

OG0024724

Physical Location & Seq

Genomic Coordinates Forward (+)

100464 .. 101006

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000009.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaccatttcgccctcaaaccaattaaaaggtaccaatgactgccatcaacatcaatctctctctctctctctcggtgaaagttcagtaacccaccgcacggctctattgttcgtctccgccctccgcttctgccaccaaaatggcattgctcaccgcgacgtcaagcctcagaacctcctcctcaaaggcaccggaaacctgaaggtctcctatttcggaccctccgacctgccagagcagctcacggacagcctcctccacatggcttgcaggacgccggcgtacacggtgtcggaggttctgtatcgggtcgggtacgacagattcaaggccaacgcgtggtcctgcggcatcatcctcttcgttctcctcacaggaaacttgcccacgacgccggctctctctctctctctctccgtcgccacctggctttgccaccatcaccttcgttgtgctcttcgcggccaggctccccaagccaacagtcatcttggtcgagaagctcggactctccgcgaccgagctggaccttccttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 ko04113 ko04138 map03060 map03070 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

180

Amino Acids

19.79

Weight (kDa)

9.38

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024724)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339601
rosa_laevigata	RLG00000034434
rosa_multiflora	Rmu_ssc0000009.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	32, 191
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccII	CGCG	4 cut(s)	159, 341, 465, 519
AciI	CCGC	7 cut(s)	97, 120, 127, 157, 351, 465, 517
AcoI	YGGCCR	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	3 cut(s)	162, 278, 395
AfaI	GTAC	3 cut(s)	34, 287, 320
AfiI	CCNNNNNNNGG	3 cut(s)	100, 265, 342
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	428, 468
AluBI	AGCT	3 cut(s)	244, 506, 527
AluI	AGCT	3 cut(s)	244, 506, 527
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	121, 214
AoxI	GGCC	2 cut(s)	333, 466
ApeKI	GCWGC	1 cut(s)	241
Asp718I	GGTACC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	221, 345, 530
AsuHPI	GGTGA	3 cut(s)	89, 146, 437
AvaII	GGWCC	3 cut(s)	221, 345, 530
BanI	GGYRCC	2 cut(s)	32, 191
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	54, 450
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	430, 470
BcoDI	GTCTC	2 cut(s)	121, 214
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	3 cut(s)	242, 352, 466
BlsI	GCNGC	3 cut(s)	243, 353, 467
Bme1390I	CCNGG	2 cut(s)	430, 470
Bme18I	GGWCC	3 cut(s)	221, 345, 530
BmgT120I	GGNCC	3 cut(s)	221, 345, 530
BmiI	GGNNCC	4 cut(s)	34, 193, 223, 474
BmrFI	CCNGG	2 cut(s)	430, 470
BmsI	GCATC	1 cut(s)	363
BsaHI	GRCGYC	3 cut(s)	162, 278, 395
BsaI	GGTCTC	1 cut(s)	214
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 265, 342
Bse118I	RCCGGY	2 cut(s)	280, 397
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	430, 470
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	3 cut(s)	100, 265, 342
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	4 cut(s)	170, 173, 248, 362
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	4 cut(s)	159, 341, 465, 519
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	335, 468
BshNI	GGYRCC	2 cut(s)	32, 191
BsiEI	CGRYCG	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	3 cut(s)	195, 281, 398
BslI	CCNNNNNNNGG	3 cut(s)	100, 265, 342
BsmAI	GTCTC	2 cut(s)	121, 214
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	335, 468
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	460
BspACI	CCGC	7 cut(s)	97, 120, 127, 157, 351, 465, 517
BspANI	GGCC	2 cut(s)	335, 468
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	4 cut(s)	159, 341, 465, 519
BspLI	GGNNCC	4 cut(s)	34, 193, 223, 474
BspMI	ACCTGC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	465
BspT107I	GGYRCC	2 cut(s)	32, 191
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	2 cut(s)	280, 397
BssAI	RCCGGY	2 cut(s)	280, 397
BssNI	GRCGYC	3 cut(s)	162, 278, 395
Bst2UI	CCWGG	2 cut(s)	430, 470
Bst4CI	ACNGT	2 cut(s)	292, 488
Bst6I	CTCTTC	2 cut(s)	368, 465
BstACI	GRCGYC	3 cut(s)	162, 278, 395
BstC8I	GCNNGC	3 cut(s)	271, 282, 399
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	4 cut(s)	159, 341, 465, 519
BstMAI	GTCTC	2 cut(s)	121, 214
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 394, 479
BstNI	CCWGG	2 cut(s)	430, 470
BstSCI	CCNGG	2 cut(s)	428, 468
BstUI	CGCG	4 cut(s)	159, 341, 465, 519
BstV1I	GCAGC	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	335, 468
BtsCI	GGATG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	271, 282, 399
Cfr10I	RCCGGY	2 cut(s)	280, 397
Cfr13I	GGNCC	3 cut(s)	221, 345, 530
CseI	GACGC	2 cut(s)	286, 403
Csp6I	GTAC	3 cut(s)	33, 286, 319
CspCI	CAANNNNNGTGG	2 cut(s)	251, 286
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	3 cut(s)	33, 286, 319
DdeI	CTNAG	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	368, 465
EarI	CTCTTC	2 cut(s)	368, 465
EciI	GGCGGA	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	3 cut(s)	221, 345, 530
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	428, 468
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	268
FaiI	YATR	1 cut(s)	266
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	242, 352, 466
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	242, 352, 466
GluI	GCNGC	3 cut(s)	242, 352, 466
HaeIII	GGCC	2 cut(s)	335, 468
HapII	CCGG	3 cut(s)	195, 281, 398
HgaI	GACGC	2 cut(s)	286, 403
Hin1I	GRCGYC	3 cut(s)	162, 278, 395
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	2 cut(s)	327, 511
HpaII	CCGG	3 cut(s)	195, 281, 398
HphI	GGTGA	3 cut(s)	89, 146, 437
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	6 cut(s)	174, 221, 229, 298, 510, 542
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	3 cut(s)	164, 397, 425
HpyAV	CCTTC	3 cut(s)	199, 458, 543
HpyCH4III	ACNGT	2 cut(s)	292, 488
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 394, 479
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	3 cut(s)	162, 278, 395
Hsp92II	CATG	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	36
KroI	GCCGGC	2 cut(s)	280, 397
KroNI	GCCGGC	2 cut(s)	282, 399
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	363
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	355, 452
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	1 cut(s)	23
MluI	ACGCGT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	252, 276
MreI	CGCCGGCG	1 cut(s)	280
MroNI	GCCGGC	2 cut(s)	280, 397
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	3 cut(s)	195, 281, 398
MspR9I	CCNGG	2 cut(s)	430, 470
MvaI	CCWGG	2 cut(s)	430, 470
MvnI	CGCG	4 cut(s)	159, 341, 465, 519
MwoI	GCNNNNNNNGC	3 cut(s)	241, 394, 479
NaeI	GCCGGC	2 cut(s)	282, 399
NgoMIV	GCCGGC	2 cut(s)	280, 397
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	4 cut(s)	34, 193, 223, 474
PciSI	GCTCTTC	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	2 cut(s)	282, 399
PfeI	GAWTC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	243, 353, 467
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	428, 468
PspGI	CCWGG	2 cut(s)	428, 468
PspN4I	GGNNCC	4 cut(s)	34, 193, 223, 474
PspPI	GGNCC	3 cut(s)	221, 345, 530
RsaI	GTAC	3 cut(s)	34, 287, 320
RsaNI	GTAC	3 cut(s)	33, 286, 319
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	242, 352, 466
Sau96I	GGNCC	3 cut(s)	221, 345, 530
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	2 cut(s)	430, 470
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	363
SgrAI	CRCCGGYG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	221, 345, 530
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	7 cut(s)	97, 120, 127, 157, 351, 465, 517
StyD4I	CCNGG	2 cut(s)	428, 468
TaaI	ACNGT	2 cut(s)	292, 488
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	499
TaqII	GACCGA	1 cut(s)	537
TasI	AATT	1 cut(s)	23
TauI	GCSGC	2 cut(s)	354, 468
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	1 cut(s)	241
TspGWI	ACGGA	2 cut(s)	263, 409
Van91I	CCANNNNNTGG	1 cut(s)	342
VpaK11BI	GGWCC	3 cut(s)	221, 345, 530
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.