RchiOBHm_Chr1g0340451

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024726
Physical Location & Seq
Reverse (-)
32006543 .. 32008889
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56724

Sequence Viewer

Length: 414 bp
ATGCAGAATCCGAACAAGGGGCTCCGAATACTCGCATTGTCACTTGGCTTTGGTAAACTCTTCTCCGGAAGAGGGGCTGTTTCCCAGCACTCTCACCCATCTAACGATCTACCGGGTCTAAATCTTAAGACCATGGATGGCGCCAAGTGGTCTGGGCATCTCAACTCTCTTGAAATTTTGAAGATTAGCTGTTTCTCTGCGCTTCAGTACTTTCCAGACAGTGGACTACCAAGTTCTCTTAAAATTTTGGAGATAAGGTATTGTTATGCGCTGCAGTGGGTAGTCCTCAAAGTGGACTACCCACTTCTCCTAAGATTTTGGAGATTTCGTATTGCTCTGTGCTGCAGTGCTTGCCAGAAAATGGGCTACCCATTTCTCCTTGTGAAATACATATCATTGGATGTCACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

137

Amino Acids

15.42

Weight (kDa)

9.36

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024726)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340451
rosa_roxburghii Rroxscaffold_4G00307490
rosa_samantha Rh1CG165300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 2 cut(s) 221, 361
AccIII TCCGGA 1 cut(s) 65
AcsI RAATTY 2 cut(s) 174, 243
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 173, 181
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Aor13HI TCCGGA 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 271, 342
ApoI RAATTY 2 cut(s) 174, 243
AspLEI GCGC 3 cut(s) 143, 202, 271
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 258, 329
BccI CCATC 2 cut(s) 106, 131
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 1 cut(s) 412
BfmI CTRYAG 2 cut(s) 272, 343
BfoI RGCGCY 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 272, 343
BlsI GCNGC 2 cut(s) 273, 344
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 23, 142
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 313, 343
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
BseAI TCCGGA 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 142, 406
BseLI CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
BseXI GCAGC 2 cut(s) 258, 329
BseYI CCCAGC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 66, 113
BslI CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 23, 142
BspMAI CTGCAG 2 cut(s) 276, 347
BspT107I GGYRCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 64, 65
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 142, 406
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 143, 202, 271
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 272, 343
BstV1I GCAGC 2 cut(s) 258, 329
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 142, 406
BtsI GCAGTG 2 cut(s) 281, 352
BtsIMutI CAGTG 3 cut(s) 226, 281, 352
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 3 cut(s) 143, 202, 271
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 22, 48, 77, 189, 366
CviKI_1 RGCY 5 cut(s) 22, 48, 77, 189, 366
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 311
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 64, 65
EarI CTCTTC 2 cut(s) 64, 65
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 136
FaiI YATR 3 cut(s) 134, 267, 392
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 272, 343
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 272, 343
FspBI CTAG 1 cut(s) 412
GlaI GCGC 3 cut(s) 142, 201, 270
GluI GCNGC 2 cut(s) 272, 343
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 144
HapII CCGG 2 cut(s) 66, 113
HhaI GCGC 3 cut(s) 143, 202, 271
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 3 cut(s) 141, 200, 269
HinP1I GCGC 3 cut(s) 141, 200, 269
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 66, 113
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 56, 224, 295
Hpy188I TCNGA 2 cut(s) 12, 26
Hpy188III TCNNGA 3 cut(s) 66, 170, 215
Hpy8I GTNNAC 3 cut(s) 56, 224, 295
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 3 cut(s) 4, 274, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 3 cut(s) 141, 200, 269
KasI GGCGCC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 79, 98, 126, 138, 228, 368
Lsp1109I GCAGC 2 cut(s) 258, 329
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 39, 403
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 52, 81, 193
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 174, 243
Mly113I GGCGCC 1 cut(s) 141
MnlI CCTC 2 cut(s) 65, 296
MroI TCCGGA 1 cut(s) 65
MseI TTAA 2 cut(s) 126, 240
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 2 cut(s) 66, 113
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 351
NarI GGCGCC 1 cut(s) 141
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 132
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 23, 142
NmuCI GTSAC 2 cut(s) 39, 403
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 2 cut(s) 221, 361
PkrI GCNGC 2 cut(s) 273, 344
PluTI GGCGCC 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 23, 142
PstI CTGCAG 2 cut(s) 276, 347
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 126, 240
SatI GCNGC 2 cut(s) 272, 343
Sau3AI GATC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 24
SetI ASST 2 cut(s) 191, 260
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 272, 343
SfoI GGCGCC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 174, 243
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 221
TasI AATT 2 cut(s) 174, 243
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 126, 240
Tru9I TTAA 2 cut(s) 126, 240
TscAI CASTG 3 cut(s) 226, 281, 352
TseFI GTSAC 2 cut(s) 39, 403
TseI GCWGC 2 cut(s) 271, 342
Tsp45I GTSAC 2 cut(s) 39, 403
TspRI CASTG 3 cut(s) 226, 281, 352
Van91I CCANNNNNTGG 2 cut(s) 221, 361
Vha464I CTTAAG 1 cut(s) 125
XapI RAATTY 2 cut(s) 174, 243
XspI CTAG 1 cut(s) 412
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.