Rroxscaffold_4G00307490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0024726
Physical Location & Seq
Forward (+)
28790187 .. 28795745
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307490.1

Sequence Viewer

Length: 393 bp
ATGTACCGTCTAAATCTTAAGACCATGGGTGGTGCCAAGTGGTTTGGGCATCACAACTCTCTTGAAATTTTGAAGATTAGCTGTTTCACTGCGCTTCAGTACTTTCCAGATAGTGGTGGACTACCTAATTCTCTTATAATATTGGAGATAAGGTATTGTTATGCTGTGCTGTGCTTGCCTCAAAGTGGACTACCCACTTCTCTTAAGCTTTTGGAGATTACGTATTGCTCTGTGCTGCAGTGCTTGCCAGAAAATGGGTTACCTGTTTCTCTTTGTGAAATACATATCATTGGATGTCATTTGCTAGAGAAACTGTGCCAGAGAGAGTGGGGAATATTGGCCCAAGATTGCTCACATCCCCCACATAATGATCACTTTCAGGCGTTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

6.35

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024726)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340451
rosa_roxburghii Rroxscaffold_4G00307490
rosa_samantha Rh1CG165300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 2 cut(s) 113, 254
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 2 cut(s) 5, 101
AfiI CCNNNNNNNGG 3 cut(s) 113, 185, 254
AflII CTTAAG 2 cut(s) 17, 203
AgsI TTSAA 2 cut(s) 65, 73
AluBI AGCT 2 cut(s) 81, 208
AluI AGCT 2 cut(s) 81, 208
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 222
BclI TGATCA 1 cut(s) 370
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 236
BfrI CTTAAG 2 cut(s) 17, 203
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmcAI AGTACT 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 206, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 185, 254
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 299, 355
BseLI CCNNNNNNNGG 3 cut(s) 113, 185, 254
BseXI GCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 113, 185, 254
BsnI GGCC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 370
Bsp19I CCATGG 1 cut(s) 24
BspANI GGCC 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 32
BspTI CTTAAG 2 cut(s) 17, 203
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 8, 315
BstAFI CTTAAG 2 cut(s) 17, 203
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 176, 245
BstDSI CCRYGG 1 cut(s) 24
BstEII GGTNACC 1 cut(s) 258
BstF5I GGATG 2 cut(s) 299, 355
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 175, 244
BstPI GGTNACC 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 236
BstSNI TACGTA 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 222
BsuRI GGCC 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 2 cut(s) 299, 355
BtsI GCAGTG 2 cut(s) 87, 245
BtsIMutI CAGTG 2 cut(s) 87, 245
Cac8I GCNNGC 2 cut(s) 176, 245
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 4, 100
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 81, 208, 341
CviKI_1 RGCY 3 cut(s) 81, 208, 341
CviQI GTAC 2 cut(s) 4, 100
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eco105I TACGTA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 80
Eco91I GGTNACC 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 137, 162, 285, 366
FatI CATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 306, 342
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 341
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 119, 188
Hpy188III TCNNGA 2 cut(s) 62, 107
Hpy8I GTNNAC 2 cut(s) 119, 188
HpyCH4III ACNGT 2 cut(s) 8, 315
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 244
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 5 cut(s) 120, 261, 276, 332, 365
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 258
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 1 cut(s) 85
MluCI AATT 2 cut(s) 66, 127
MnlI CCTC 1 cut(s) 189
MseI TTAA 2 cut(s) 18, 204
MspCI CTTAAG 2 cut(s) 17, 203
MwoI GCNNNNNNNGC 2 cut(s) 175, 244
NcoI CCATGG 1 cut(s) 24
NdeII GATC 1 cut(s) 370
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 34
PflMI CCANNNNNTGG 2 cut(s) 113, 254
PkrI GCNGC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 222
PsiI TTATAA 1 cut(s) 137
PspEI GGTNACC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 340
PstI CTGCAG 1 cut(s) 240
RsaI GTAC 2 cut(s) 5, 101
RsaNI GTAC 2 cut(s) 4, 100
SaqAI TTAA 2 cut(s) 18, 204
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 101
SetI ASST 6 cut(s) 83, 127, 155, 210, 224, 265
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 17, 203
SmoI CTYRAG 2 cut(s) 17, 203
SnaBI TACGTA 1 cut(s) 222
Sse9I AATT 2 cut(s) 66, 127
SspI AATATT 2 cut(s) 141, 336
SspMI CTAG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 8, 315
TaiI ACGT 1 cut(s) 224
TasI AATT 2 cut(s) 66, 127
TatI WGTACW 1 cut(s) 99
Tru1I TTAA 2 cut(s) 18, 204
Tru9I TTAA 2 cut(s) 18, 204
TscAI CASTG 2 cut(s) 94, 245
TseI GCWGC 1 cut(s) 235
TspRI CASTG 2 cut(s) 94, 245
Van91I CCANNNNNTGG 2 cut(s) 113, 254
Vha464I CTTAAG 2 cut(s) 17, 203
XapI RAATTY 1 cut(s) 66
XspI CTAG 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.