Rh1CG165300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0024726
Physical Location & Seq
Forward (+)
36421313 .. 36424986
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG165300.1

Sequence Viewer

Length: 414 bp
ATGCAGAATCCGAACAAGGGGCTCCGAATACTCGCAATGTCACTTGGCTTTGGTAAACTCTTCTCCGGAAGAGGGGCTGTTTCCCAGCACTCTCACCCATCTAACGATCTACCGGGTCTAAATCTTAAGACCATGGATGGCGCCAAGTGGTCTGGGCATCTCAACTCTCTTGAAATTTTGAAGATTAGCTGTTTCTCTGCGCTTCAGTACTTTCCAGACAGTGGACTACCAAGTTCTCTTAAAATTTTGGAGATAAGGTATTGTTATGCGCTGCAGTGGGTAGTCCTCAAAGTGGACTACCCACTTCTCCTAAGATTTTGGAGATTTCGAATTGCTCTGTGCTGCAGTGCTTGCCAGAAAATGGGCTACCCATTTCTCTTTGTGAAATACATATCATTGGATGTCACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

9.36

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024726)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340451
rosa_roxburghii Rroxscaffold_4G00307490
rosa_samantha Rh1CG165300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 2 cut(s) 221, 361
AccIII TCCGGA 1 cut(s) 65
AcsI RAATTY 2 cut(s) 174, 243
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 173, 181
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Aor13HI TCCGGA 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 271, 342
ApoI RAATTY 2 cut(s) 174, 243
AspLEI GCGC 3 cut(s) 143, 202, 271
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 86
AsuII TTCGAA 1 cut(s) 328
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 258, 329
BccI CCATC 2 cut(s) 106, 131
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 1 cut(s) 412
BfmI CTRYAG 2 cut(s) 272, 343
BfoI RGCGCY 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 272, 343
BlsI GCNGC 2 cut(s) 273, 344
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 23, 142
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
Bse3DI GCAATG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 142, 406
BseLI CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 258, 329
BseYI CCCAGC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 66, 113
BslI CCNNNNNNNGG 5 cut(s) 17, 72, 221, 292, 361
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 23, 142
BspMAI CTGCAG 2 cut(s) 276, 347
BspT104I TTCGAA 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 64, 65
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 142, 406
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 143, 202, 271
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 272, 343
BstV1I GCAGC 2 cut(s) 258, 329
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 142, 406
BtsI GCAGTG 2 cut(s) 281, 352
BtsIMutI CAGTG 3 cut(s) 226, 281, 352
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 3 cut(s) 143, 202, 271
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 22, 48, 77, 189, 366
CviKI_1 RGCY 5 cut(s) 22, 48, 77, 189, 366
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 311
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 64, 65
EarI CTCTTC 2 cut(s) 64, 65
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 136
FaiI YATR 3 cut(s) 134, 267, 392
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 272, 343
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 272, 343
FspBI CTAG 1 cut(s) 412
GlaI GCGC 3 cut(s) 142, 201, 270
GluI GCNGC 2 cut(s) 272, 343
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 144
HapII CCGG 2 cut(s) 66, 113
HhaI GCGC 3 cut(s) 143, 202, 271
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 3 cut(s) 141, 200, 269
HinP1I GCGC 3 cut(s) 141, 200, 269
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 66, 113
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 56, 224, 295
Hpy188I TCNGA 2 cut(s) 12, 26
Hpy188III TCNNGA 3 cut(s) 66, 170, 215
Hpy8I GTNNAC 3 cut(s) 56, 224, 295
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 3 cut(s) 4, 274, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 3 cut(s) 141, 200, 269
KasI GGCGCC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 79, 98, 126, 138, 228, 368
Lsp1109I GCAGC 2 cut(s) 258, 329
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 39, 403
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 52, 81, 193
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 3 cut(s) 174, 243, 330
Mly113I GGCGCC 1 cut(s) 141
MnlI CCTC 2 cut(s) 65, 296
MroI TCCGGA 1 cut(s) 65
MseI TTAA 2 cut(s) 126, 240
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 2 cut(s) 66, 113
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 351
NarI GGCGCC 1 cut(s) 141
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 132
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 23, 142
NmuCI GTSAC 2 cut(s) 39, 403
NspV TTCGAA 1 cut(s) 328
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 2 cut(s) 221, 361
PkrI GCNGC 2 cut(s) 273, 344
PluTI GGCGCC 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 23, 142
PstI CTGCAG 2 cut(s) 276, 347
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 126, 240
SatI GCNGC 2 cut(s) 272, 343
Sau3AI GATC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 24
SetI ASST 2 cut(s) 191, 260
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 272, 343
SfoI GGCGCC 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 174, 243, 330
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 328
TasI AATT 3 cut(s) 174, 243, 330
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 126, 240
Tru9I TTAA 2 cut(s) 126, 240
TscAI CASTG 3 cut(s) 226, 281, 352
TseFI GTSAC 2 cut(s) 39, 403
TseI GCWGC 2 cut(s) 271, 342
Tsp45I GTSAC 2 cut(s) 39, 403
TspRI CASTG 3 cut(s) 226, 281, 352
Van91I CCANNNNNTGG 2 cut(s) 221, 361
Vha464I CTTAAG 1 cut(s) 125
XapI RAATTY 2 cut(s) 174, 243
XspI CTAG 1 cut(s) 412
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.