RchiOBHm_Chr1g0347121

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
39736709 .. 39738897
2189 bp
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UTR
Exon/CDS
Intron
PRQ57327

Sequence Viewer

Length: 396 bp
ATGCTTGCATTGCCCTATCATGCCTGTTTTAGTTATATTTTTACTCTTGGAGATTGTCTCAGTGTGTATATACTTGGCTTCCTACACAATGAGACCACTGGTTTTAGAATATGGATGATGAAGGAATATGGGGTCAAGGAGTCTTGGACCGAGGTTATAGGTTCAGAGAGTTTACCTGAAGAGTATGAATTATCTCTCTTGACACCTCTGTGCATTTTAGAGAATGGCAAAGTTTTGATGGTTAAAATTGATAATTATCAGTCCTTGGTGTTATATAGCCCGAAGGAACAGATATTTAGGGATGTTATTAGGACACAAAACAAATGGAAGTTGGATACAGCCATTTACAGGGAGACTTTAGTTTCACCAGTAACCAGCCGTATTGCAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

15.19

Weight (kDa)

5.14

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024796)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0347121
rosa_multiflora Rmu_sc0002705.1_g000021
rosa_wichuraiana Rw1G017010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 348
AleI CACNNNNGTG 1 cut(s) 208
Alw26I GTCTC 3 cut(s) 62, 86, 347
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 357
AvaII GGWCC 1 cut(s) 147
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 363
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 62, 86, 347
BfuI GTATCC 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 150, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 103, 368
Bse3DI GCAATG 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 150, 264
BseGI GGATG 2 cut(s) 120, 307
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 103, 368
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 62, 86, 347
Bso31I GGTCTC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 8
BsrI ACTGG 2 cut(s) 103, 368
BssECI CCNNGG 2 cut(s) 150, 264
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 120, 307
BstMAI GTCTC 3 cut(s) 62, 86, 347
BstMWI GCNNNNNNNGC 1 cut(s) 10
BsuI GTATCC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 120, 307
BtsIMutI CAGTG 2 cut(s) 67, 96
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 1 cut(s) 20
CviJI RGCY 4 cut(s) 78, 279, 341, 378
CviKI_1 RGCY 4 cut(s) 78, 279, 341, 378
DdeI CTNAG 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 23
FatI CATG 1 cut(s) 19
FokI GGATG 2 cut(s) 127, 314
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 140
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 166, 395
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 115, 277
HpyCH4V TGCA 3 cut(s) 8, 213, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 23
LpnPI CCDG 6 cut(s) 37, 84, 189, 334, 381, 388
MaeIII GTNAC 1 cut(s) 370
MboII GAAGA 1 cut(s) 191
MluCI AATT 3 cut(s) 188, 246, 253
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 2 cut(s) 145, 216
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 208
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 149
SetI ASST 4 cut(s) 156, 163, 178, 208
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 208
Sse9I AATT 3 cut(s) 188, 246, 253
StyI CCWWGG 1 cut(s) 264
TaqII GACCGA 1 cut(s) 164
TasI AATT 3 cut(s) 188, 246, 253
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 67, 103
TspDTI ATGAA 2 cut(s) 134, 201
TspRI CASTG 2 cut(s) 67, 103
VpaK11BI GGWCC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.