Rmu_sc0002705.1_g000021

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002705.1
OG0024796
Physical Location & Seq
Reverse (-)
76560 .. 77691
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002705.1_g000021.1.cds

Sequence Viewer

Length: 948 bp
atggtggacgccggcggccttcataagctagctcttaccagtctcgccgaccacgacggcgtccttgacgagattctggcaaggcctaccggtcaaatcactgatgcgatttcgctgcgtctgcaactcatggcgtgctctcatttcccagtctcattttgtcaccaagcacttcacttacgcaagccgatgcatcaccgagtccacctcaaggctccttttctcgacgaatccatagactacgaagccctgaaggatttgaatgatgcagattctcatcttgcaattagaaagctcaagtttccggaagggattgcgatatggaacccttgtactggagaatccattgtgttgccaaaacctactgatgattgcataccgcagttttgcggatttggttatgattccgctcatgatgattacaatttacaaggtaggtgcgggtgcttgttaaatggagttctgcattggttagagaccacattcactgattatcgtccgacagggtcgaaaattatctcatttgatttaggggaggaggagtttagggagatgcttgcattgccctatcatgcctgttttagttatatttttactcttggagattgtctcagcgtgtatatacttggcttcctacacaatgagaccactggttttagaatatggatgatgaaggaaaatggggtcaaggagtcttggaccgaggttatatgttcagagagtttacctgaagagtatgaattatctctcttgacacctctgtgcattttagagaacggcgaagttttgatggttaaaattgataattatcagtccttggtgttatatagcccgaaggaacagatatttagggttgttattaggacacaaaacaaatggaagttggatgcagccatttacagggagactttagtttcaccaggaaccagccgtgttgcagacatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

315

Amino Acids

35.66

Weight (kDa)

5.19

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024796)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0347121
rosa_multiflora Rmu_sc0002705.1_g000021
rosa_wichuraiana Rw1G017010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 5 cut(s) 15, 380, 390, 408, 441
AcuI CTGAAG 2 cut(s) 272, 750
AcyI GRCGYC 2 cut(s) 9, 60
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 3 cut(s) 211, 335, 900
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 262
AjnI CCWGG 1 cut(s) 919
AleI CACNNNNGTG 1 cut(s) 760
AluBI AGCT 3 cut(s) 28, 32, 295
AluI AGCT 3 cut(s) 28, 32, 295
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 6 cut(s) 47, 157, 470, 614, 638, 899
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 16, 83
ApeKI GCWGC 2 cut(s) 115, 890
AsiGI ACCGGT 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 699
AsuHPI GGTGA 3 cut(s) 155, 188, 909
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 102, 902
BccI CCATC 1 cut(s) 784
BceAI ACGGC 3 cut(s) 73, 793, 915
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 921
BcoDI GTCTC 6 cut(s) 47, 157, 470, 614, 638, 899
BfaI CTAG 1 cut(s) 29
BisI GCNGC 3 cut(s) 16, 116, 891
BlsI GCNGC 3 cut(s) 17, 117, 892
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 1 cut(s) 699
BmgT120I GGNCC 1 cut(s) 699
BmiI GGNNCC 3 cut(s) 216, 326, 925
BmrFI CCNGG 1 cut(s) 921
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 6 cut(s) 94, 180, 202, 256, 543, 877
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 143
BplI GAGNNNNNCTC 4 cut(s) 192, 224, 594, 626
BpmI CTGGAG 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 194, 281
BsaBI GATNNNNATC 2 cut(s) 276, 807
BsaHI GRCGYC 2 cut(s) 9, 60
BsaI GGTCTC 2 cut(s) 470, 638
BsaJI CCNNGG 2 cut(s) 702, 816
BsaWI WCCGGW 2 cut(s) 89, 304
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 335, 900
Bse118I RCCGGY 2 cut(s) 11, 89
Bse1I ACTGG 4 cut(s) 39, 149, 340, 655
Bse3DI GCAATG 1 cut(s) 560
Bse8I GATNNNNATC 2 cut(s) 276, 807
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 2 cut(s) 702, 816
BseGI GGATG 2 cut(s) 672, 892
BseJI GATNNNNATC 2 cut(s) 276, 807
BseLI CCNNNNNNNGG 3 cut(s) 211, 335, 900
BseMI GCAATG 1 cut(s) 560
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 4 cut(s) 39, 149, 340, 655
BseRI GAGGAG 2 cut(s) 551, 554
BseXI GCAGC 2 cut(s) 102, 902
BshFI GGCC 2 cut(s) 18, 85
BshTI ACCGGT 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 3 cut(s) 12, 90, 305
BslI CCNNNNNNNGG 3 cut(s) 211, 335, 900
BsmAI GTCTC 6 cut(s) 47, 157, 470, 614, 638, 899
BsnI GGCC 2 cut(s) 18, 85
Bso31I GGTCTC 2 cut(s) 470, 638
Bsp1286I GDGCHC 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 304
BspACI CCGC 5 cut(s) 15, 380, 390, 408, 441
BspANI GGCC 2 cut(s) 18, 85
BspCNI CTCAG 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 304
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 216, 326, 925
BspOI GCTAGC 1 cut(s) 32
BspTNI GGTCTC 2 cut(s) 470, 638
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 560
BsrFI RCCGGY 2 cut(s) 11, 89
BsrI ACTGG 4 cut(s) 39, 149, 340, 655
BssAI RCCGGY 2 cut(s) 11, 89
BssECI CCNNGG 2 cut(s) 702, 816
BssNI GRCGYC 2 cut(s) 9, 60
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 921
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 2 cut(s) 9, 60
BstC8I GCNNGC 5 cut(s) 13, 30, 136, 185, 558
BstDEI CTNAG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 672, 892
BstMAI GTCTC 6 cut(s) 47, 157, 470, 614, 638, 899
BstMWI GCNNNNNNNGC 2 cut(s) 121, 562
BstNI CCWGG 1 cut(s) 921
BstSCI CCNGG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 102, 902
BsuRI GGCC 2 cut(s) 18, 85
BtsCI GGATG 2 cut(s) 672, 892
BtsIMutI CAGTG 3 cut(s) 99, 486, 648
Cac8I GCNNGC 5 cut(s) 13, 30, 136, 185, 558
CciI TCATGA 1 cut(s) 412
Cfr10I RCCGGY 2 cut(s) 11, 89
Cfr13I GGNCC 1 cut(s) 699
CseI GACGC 3 cut(s) 17, 49, 107
Csp6I GTAC 1 cut(s) 333
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 3 cut(s) 130, 413, 572
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 611
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Eco130I CCWWGG 1 cut(s) 816
Eco147I AGGCCT 1 cut(s) 85
Eco31I GGTCTC 2 cut(s) 470, 638
Eco47I GGWCC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 272, 750
EcoRII CCWGG 1 cut(s) 919
EcoT14I CCWWGG 1 cut(s) 816
EcoT22I ATGCAT 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 3 cut(s) 133, 416, 575
FatI CATG 3 cut(s) 129, 412, 571
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 3 cut(s) 16, 116, 891
FokI GGATG 2 cut(s) 679, 899
Fsp4HI GCNGC 3 cut(s) 16, 116, 891
FspBI CTAG 1 cut(s) 29
GluI GCNGC 3 cut(s) 16, 116, 891
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 2 cut(s) 18, 85
HapII CCGG 3 cut(s) 12, 90, 305
HgaI GACGC 3 cut(s) 17, 49, 107
Hin1I GRCGYC 2 cut(s) 9, 60
Hin1II CATG 3 cut(s) 133, 416, 575
HinfI GANTC 7 cut(s) 73, 201, 230, 272, 341, 404, 692
HpaII CCGG 3 cut(s) 12, 90, 305
HphI GGTGA 3 cut(s) 155, 188, 909
Hpy166II GTNNAC 3 cut(s) 7, 205, 725
Hpy188I TCNGA 3 cut(s) 501, 718, 947
Hpy188III TCNNGA 4 cut(s) 224, 305, 413, 751
Hpy8I GTNNAC 3 cut(s) 7, 205, 725
Hpy99I CGWCG 2 cut(s) 59, 230
HpyAV CCTTC 5 cut(s) 29, 247, 302, 667, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 562
HpyF3I CTNAG 1 cut(s) 611
Hsp92I GRCGYC 2 cut(s) 9, 60
Hsp92II CATG 3 cut(s) 133, 416, 575
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 2 cut(s) 102, 902
LweI GCATC 6 cut(s) 94, 180, 202, 256, 543, 877
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 410
MboII GAAGA 1 cut(s) 743
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 6 cut(s) 285, 424, 513, 740, 798, 805
MlyI GAGTC 2 cut(s) 210, 701
MmeI TCCRAC 2 cut(s) 524, 864
MnlI CCTC 5 cut(s) 218, 529, 532, 697, 768
Mph1103I ATGCAT 1 cut(s) 195
MreI CGCCGGCG 1 cut(s) 11
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 2 cut(s) 452, 795
MslI CAYNNNNRTG 1 cut(s) 760
MspI CCGG 3 cut(s) 12, 90, 305
MspR9I CCNGG 1 cut(s) 921
MvaI CCWGG 1 cut(s) 921
MwoI GCNNNNNNNGC 2 cut(s) 121, 562
NaeI GCCGGC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 11
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 133, 416, 575
NlaIV GGNNCC 3 cut(s) 216, 326, 925
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 760
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 5 cut(s) 73, 230, 272, 341, 404
PflFI GACNNNGTC 2 cut(s) 59, 505
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 3 cut(s) 17, 117, 892
PleI GAGTC 2 cut(s) 209, 700
PpsI GAGTC 2 cut(s) 209, 700
Psp6I CCWGG 1 cut(s) 919
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 3 cut(s) 216, 326, 925
PspPI GGNCC 1 cut(s) 699
PsyI GACNNNGTC 2 cut(s) 59, 505
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 760
SaqAI TTAA 2 cut(s) 452, 795
SatI GCNGC 3 cut(s) 16, 116, 891
Sau96I GGNCC 1 cut(s) 699
SchI GAGTC 2 cut(s) 210, 701
ScrFI CCNGG 1 cut(s) 921
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 6 cut(s) 94, 180, 202, 256, 543, 877
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 760
SmlI CTYRAG 2 cut(s) 209, 296
SmoI CTYRAG 2 cut(s) 209, 296
Sse9I AATT 6 cut(s) 285, 424, 513, 740, 798, 805
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 5 cut(s) 15, 380, 390, 408, 441
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 919
StyI CCWWGG 1 cut(s) 816
TaqI TCGA 2 cut(s) 225, 509
TaqII GACCGA 1 cut(s) 716
TasI AATT 6 cut(s) 285, 424, 513, 740, 798, 805
TatI WGTACW 1 cut(s) 332
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 5 cut(s) 73, 230, 272, 341, 404
Tru1I TTAA 2 cut(s) 452, 795
Tru9I TTAA 2 cut(s) 452, 795
TscAI CASTG 3 cut(s) 106, 493, 655
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 115, 890
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 11, 686, 753
TspRI CASTG 3 cut(s) 106, 493, 655
Tth111I GACNNNGTC 2 cut(s) 59, 505
VpaK11BI GGWCC 1 cut(s) 699
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.