Rw1G017010

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0024796
Physical Location & Seq
Reverse (-)
37744368 .. 37744898
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017010.1

Sequence Viewer

Length: 456 bp
ATGGTGGACGCCGGCGGCCTTCATAAGCGAGCTCTTACCAGTCTCGCCGACCACGACGGCGTCCTTGACGAGATTCTGGCAAGGCCTACCGGTCAAATCACTGATGCGATTTCGCTGCGTCTGCAACTCATGGCGTGCTCTCATTTCCCAGTCTCATTTTGTCACCAAGCACTTCACTTACGCAAGCCAAGGCATCACCGAGTCCACCTCAAGGCTCCTTTTCTCGACGAATCCATAGACTACGAAGCCCTGAAGGATTTGAATGATGCAGATTCTCATCTTGCAATTAGAAAGCTCAAGTTTCCGGAAGGGATTGCGATATGGAACCCTTGTACTGGAGAATCCATTGTGTTGCCAAAACCTACTGATGATTGCATACCGCAGTTTTGCGGATTTGGTTATGATTCCGCTCATGATGATTACAATTTACAAGGTAGTGAGAGGGTACAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

5.87

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024796)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0347121
rosa_multiflora Rmu_sc0002705.1_g000021
rosa_wichuraiana Rw1G017010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 4 cut(s) 15, 380, 390, 408
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 2 cut(s) 9, 60
AfaI GTAC 2 cut(s) 334, 447
AfiI CCNNNNNNNGG 2 cut(s) 211, 335
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 2 cut(s) 32, 295
AluI AGCT 2 cut(s) 32, 295
Alw21I GWGCWC 2 cut(s) 34, 140
Alw26I GTCTC 2 cut(s) 47, 157
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 16, 83
ApeKI GCWGC 1 cut(s) 115
AsiGI ACCGGT 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 155, 188
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 34, 140
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BcoDI GTCTC 2 cut(s) 47, 157
BisI GCNGC 2 cut(s) 16, 116
BlsI GCNGC 2 cut(s) 17, 117
BmiI GGNNCC 2 cut(s) 216, 326
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 3 cut(s) 94, 202, 256
BmuI ACTGGG 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 194, 281
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 2 cut(s) 9, 60
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 89, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 335
Bse118I RCCGGY 2 cut(s) 11, 89
Bse1I ACTGG 3 cut(s) 39, 149, 340
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 188
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 211, 335
BseNI ACTGG 3 cut(s) 39, 149, 340
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 18, 85
BshTI ACCGGT 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 34, 140
BsiSI CCGG 3 cut(s) 12, 90, 305
BslI CCNNNNNNNGG 2 cut(s) 211, 335
BsmAI GTCTC 2 cut(s) 47, 157
BsnI GGCC 2 cut(s) 18, 85
Bsp1286I GDGCHC 2 cut(s) 34, 140
Bsp13I TCCGGA 1 cut(s) 304
BspACI CCGC 4 cut(s) 15, 380, 390, 408
BspANI GGCC 2 cut(s) 18, 85
BspEI TCCGGA 1 cut(s) 304
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 216, 326
BsrBI CCGCTC 1 cut(s) 410
BsrFI RCCGGY 2 cut(s) 11, 89
BsrI ACTGG 3 cut(s) 39, 149, 340
BssAI RCCGGY 2 cut(s) 11, 89
BssECI CCNNGG 1 cut(s) 188
BssNI GRCGYC 2 cut(s) 9, 60
BssT1I CCWWGG 1 cut(s) 188
BstACI GRCGYC 2 cut(s) 9, 60
BstC8I GCNNGC 4 cut(s) 13, 30, 136, 185
BstMAI GTCTC 2 cut(s) 47, 157
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 18, 85
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 13, 30, 136, 185
CciI TCATGA 1 cut(s) 412
Cfr10I RCCGGY 2 cut(s) 11, 89
CseI GACGC 3 cut(s) 17, 49, 107
Csp6I GTAC 2 cut(s) 333, 446
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 2 cut(s) 130, 413
CviJI RGCY 7 cut(s) 18, 32, 85, 187, 215, 248, 295
CviKI_1 RGCY 7 cut(s) 18, 32, 85, 187, 215, 248, 295
CviQI GTAC 2 cut(s) 333, 446
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 188
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 133, 416
FaiI YATR 8 cut(s) 24, 131, 236, 322, 377, 402, 414, 454
FatI CATG 2 cut(s) 129, 412
Fnu4HI GCNGC 2 cut(s) 16, 116
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 2 cut(s) 16, 116
GluI GCNGC 2 cut(s) 16, 116
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 2 cut(s) 18, 85
HapII CCGG 3 cut(s) 12, 90, 305
HgaI GACGC 3 cut(s) 17, 49, 107
Hin1I GRCGYC 2 cut(s) 9, 60
Hin1II CATG 2 cut(s) 133, 416
HinfI GANTC 6 cut(s) 73, 201, 230, 272, 341, 404
HpaII CCGG 3 cut(s) 12, 90, 305
HphI GGTGA 2 cut(s) 155, 188
Hpy166II GTNNAC 2 cut(s) 7, 205
Hpy188III TCNNGA 3 cut(s) 224, 305, 413
Hpy8I GTNNAC 2 cut(s) 7, 205
Hpy99I CGWCG 2 cut(s) 59, 230
HpyAV CCTTC 3 cut(s) 29, 247, 302
HpyCH4V TGCA 4 cut(s) 124, 269, 284, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
Hsp92I GRCGYC 2 cut(s) 9, 60
Hsp92II CATG 2 cut(s) 133, 416
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 8 cut(s) 25, 52, 62, 103, 162, 263, 318, 321
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 3 cut(s) 94, 202, 256
MaeIII GTNAC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 34, 140
MluCI AATT 3 cut(s) 285, 424, 449
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 2 cut(s) 218, 435
MreI CGCCGGCG 1 cut(s) 11
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 11
MspI CCGG 3 cut(s) 12, 90, 305
MwoI GCNNNNNNNGC 1 cut(s) 121
NaeI GCCGGC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 133, 416
NlaIV GGNNCC 2 cut(s) 216, 326
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 5 cut(s) 73, 230, 272, 341, 404
PflFI GACNNNGTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 2 cut(s) 17, 117
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 216, 326
PsyI GACNNNGTC 1 cut(s) 59
RsaI GTAC 2 cut(s) 334, 447
RsaNI GTAC 2 cut(s) 333, 446
SacI GAGCTC 1 cut(s) 34
SatI GCNGC 2 cut(s) 16, 116
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 2 cut(s) 34, 140
SetI ASST 5 cut(s) 34, 210, 297, 364, 436
SfaNI GCATC 3 cut(s) 94, 202, 256
SgrAI CRCCGGYG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 209, 296
SmoI CTYRAG 2 cut(s) 209, 296
Sse9I AATT 3 cut(s) 285, 424, 449
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 4 cut(s) 15, 380, 390, 408
SstI GAGCTC 1 cut(s) 34
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 188
TaqI TCGA 1 cut(s) 225
TasI AATT 3 cut(s) 285, 424, 449
TatI WGTACW 1 cut(s) 332
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 5 cut(s) 73, 230, 272, 341, 404
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 11
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.