RchiOBHm_Chr1g0353561

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
46754595 .. 46755900
1306 bp
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UTR
Exon/CDS
Intron
PRQ57919

Sequence Viewer

Length: 480 bp
ATGTTCTTTTTGATAATTAGGCGTGCAGTTGTTACAGGTTCAAATCAAGGGATTGGATTTGGAACAGTTACGCTATTGGCTTCAGAAGGGGTCAAGGTTGTGCTAACTGCTTTGGATGAGAAGAGAGGTCTTGAAGCTATTGAAAAGCTAAAAGACTATGGCTTCTCAGATCTTGTGGTTTATCATCAGCTCGATGTAACTGACCCAATAGCATTGCTTTCCTTGCCGATTTTGTCAAAACCCAATTTGGGAAACTCGATATCTTGTACTTATGATGTAAACAATGCAGGGATTGGTGGAACCTTTGTAGACCCTGAAGCTTTCAAAGCTGCTGCAGCTGCAGGCATGGCTGAAGAATGTGTGAAAATAAACTACTATGGTGCCAAGAAAATGACTGAAGCATTCCTTCCTCTCCTTCAGCTATCTGATTCTCCAAGAGTTTCCAATATTACTTCTGGCGGGGGACAGTTCATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

16.92

Weight (kDa)

5.1

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 9 - 156 1.2e-15 short chain dehydrogenase
adh_short_C2 PF13561 15 - 156 2.1e-09 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022586)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0353561
rosa_multiflora Rmu_sc0005914.1_g000006
rosa_samantha Rh1BG218700 Rh1DG245100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 459
AcuI CTGAAG 5 cut(s) 66, 336, 372, 401, 417
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 4 cut(s) 42, 134, 143, 325
AluBI AGCT 7 cut(s) 137, 148, 190, 320, 329, 338, 421
AluI AGCT 7 cut(s) 137, 148, 190, 320, 329, 338, 421
ApeKI GCWGC 4 cut(s) 329, 332, 335, 338
BanI GGYRCC 1 cut(s) 380
BbvI GCAGC 4 cut(s) 316, 319, 325, 347
BfmI CTRYAG 2 cut(s) 333, 339
BglII AGATCT 1 cut(s) 169
BisI GCNGC 4 cut(s) 330, 333, 336, 339
BlsI GCNGC 4 cut(s) 331, 334, 337, 340
BmiI GGNNCC 2 cut(s) 301, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 212
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 4 cut(s) 316, 319, 325, 347
BsgI GTGCAG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 248
BsmI GAATGC 1 cut(s) 401
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 301, 382
BspMAI CTGCAG 2 cut(s) 337, 343
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 212
BssMI GATC 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 67, 468
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 24, 343
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 5 cut(s) 223, 326, 335, 338, 347
BstSFI CTRYAG 2 cut(s) 333, 339
BstV1I GCAGC 4 cut(s) 316, 319, 325, 347
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 24, 343
CciI TCATGA 1 cut(s) 471
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 346, 472
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 261
Eco57I CTGAAG 5 cut(s) 66, 336, 372, 401, 417
EcoRV GATATC 1 cut(s) 261
FaeI CATG 2 cut(s) 349, 475
FaiI YATR 6 cut(s) 159, 273, 347, 378, 473, 478
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 2 cut(s) 345, 471
FauI CCCGC 1 cut(s) 452
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 330, 333, 336, 339
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 330, 333, 336, 339
GluI GCNGC 4 cut(s) 330, 333, 336, 339
Hin1II CATG 2 cut(s) 349, 475
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 280, 310
Hpy188I TCNGA 3 cut(s) 85, 169, 427
Hpy188III TCNNGA 2 cut(s) 131, 472
Hpy8I GTNNAC 2 cut(s) 280, 310
HpyAV CCTTC 3 cut(s) 80, 416, 425
HpyCH4III ACNGT 2 cut(s) 67, 468
HpyCH4V TGCA 4 cut(s) 26, 287, 335, 341
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 326, 335, 338, 347
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 2 cut(s) 349, 475
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 21, 273, 327, 327, 441
Lsp1109I GCAGC 4 cut(s) 316, 319, 325, 347
MaeIII GTNAC 3 cut(s) 31, 67, 196
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 133, 365
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 15, 244
MnlI CCTC 2 cut(s) 119, 420
MspA1I CMGCKG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 223, 326, 335, 338, 347
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 349, 475
NlaIV GGNNCC 2 cut(s) 301, 382
PagI TCATGA 1 cut(s) 471
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 4 cut(s) 331, 334, 337, 340
PspN4I GGNNCC 2 cut(s) 301, 382
PstI CTGCAG 2 cut(s) 337, 343
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 4 cut(s) 330, 333, 336, 339
Sau3AI GATC 1 cut(s) 169
SfcI CTRYAG 2 cut(s) 333, 339
Sse9I AATT 2 cut(s) 15, 244
SsiI CCGC 1 cut(s) 459
SspI AATATT 1 cut(s) 448
TaaI ACNGT 2 cut(s) 67, 468
TaqI TCGA 2 cut(s) 192, 257
TasI AATT 2 cut(s) 15, 244
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 428
TseI GCWGC 4 cut(s) 329, 332, 335, 338
TspDTI ATGAA 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.