Rh1DG245100

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
45965691 .. 45966912
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG245100.1

Sequence Viewer

Length: 528 bp
ATGTTCTTTTTTATTACTAGGCGTGCAGTTGTTACAGGTTCAAATCAAGGGATTGGATTTGGAACAGTTACGCTATTGGTTTCAGAAGGGGTCAAGGTTGTGCTAACTGCTTTGGATGAGAAGAGAGGTCTTGAAGCTATTGAAAAGCTAAAAGACAATGGCTTCTTAGATCTTGTGGTTTATCATCAGCTCGATGTAACTGACCCTAATAGCATTGCTTTCCTTGCCGATTTTGTCAAAACCCAATTTGGGAAACTCGATATCTTGGTAAACAATGCAGGGATTGGTGGAACCTTTGTAGACCCTGAAGCTTTCAAACCTGCTGCAGCTGCAGGCATGGATAAGGATGATGTAGTAGTCAACTTGAGTAAACTAATTATTCAAACATATGAGTTAGCTGAAGAATGTGTGAAAATAAACTACTACGGTGCCAAGAAAATGACCGAAACATTCCTTCCTCTCCTTCAGCTATCTGATTCTCCAAGAGTTTCCACTATTACTTCTGCCGTGGGACAGTTGACGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

18.97

Weight (kDa)

4.87

Isoelectric Point (pI)

22.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 9 - 172 6.5e-22 short chain dehydrogenase
adh_short_C2 PF13561 15 - 98 1.1e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022586)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0353561
rosa_multiflora Rmu_sc0005914.1_g000006
rosa_samantha Rh1BG218700 Rh1DG245100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 300
AcuI CTGAAG 3 cut(s) 327, 420, 449
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 5 cut(s) 42, 134, 143, 316, 383
AluBI AGCT 7 cut(s) 137, 148, 190, 311, 329, 398, 469
AluI AGCT 7 cut(s) 137, 148, 190, 311, 329, 398, 469
ApeKI GCWGC 3 cut(s) 323, 326, 329
BanI GGYRCC 1 cut(s) 428
BbvI GCAGC 3 cut(s) 310, 316, 338
BceAI ACGGC 1 cut(s) 491
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 324, 330
BfuAI ACCTGC 1 cut(s) 328
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 324, 327, 330
BlsI GCNGC 3 cut(s) 325, 328, 331
BmiI GGNNCC 2 cut(s) 292, 430
BpuEI CTTGAG 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 121, 352
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 310, 316, 338
BsgI GTGCAG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 249
Bsp143I GATC 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 292, 430
BspMAI CTGCAG 2 cut(s) 328, 334
BspMI ACCTGC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 1 cut(s) 169
Bst4CI ACNGT 4 cut(s) 67, 428, 516, 523
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 24, 334
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 121, 352
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 224, 329
BstSFI CTRYAG 2 cut(s) 324, 330
BstV1I GCAGC 3 cut(s) 310, 316, 338
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 2 cut(s) 121, 352
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 24, 334
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 137, 148, 162, 190, 311, 329, 398, 469
CviKI_1 RGCY 8 cut(s) 137, 148, 162, 190, 311, 329, 398, 469
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 262
Eco57I CTGAAG 3 cut(s) 327, 420, 449
EcoRV GATATC 1 cut(s) 262
FaeI CATG 1 cut(s) 340
FaiI YATR 4 cut(s) 338, 388, 390, 526
FatI CATG 1 cut(s) 336
FauNDI CATATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 324, 327, 330
FokI GGATG 2 cut(s) 128, 359
Fsp4HI GCNGC 3 cut(s) 324, 327, 330
FspBI CTAG 1 cut(s) 18
GluI GCNGC 3 cut(s) 324, 327, 330
Hin1II CATG 1 cut(s) 340
HincII GTYRAC 2 cut(s) 361, 519
HindII GTYRAC 2 cut(s) 361, 519
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 476
Hpy166II GTNNAC 5 cut(s) 271, 301, 361, 371, 519
Hpy188I TCNGA 2 cut(s) 85, 475
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 5 cut(s) 271, 301, 361, 371, 519
HpyAV CCTTC 3 cut(s) 80, 464, 473
HpyCH4III ACNGT 4 cut(s) 67, 428, 516, 523
HpyCH4V TGCA 4 cut(s) 26, 278, 326, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 329
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 21, 264, 318, 318, 333
Lsp1109I GCAGC 3 cut(s) 310, 316, 338
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 31, 67, 196
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 133, 413
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 245, 375
MnlI CCTC 2 cut(s) 119, 468
MspA1I CMGCKG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 224, 329
NdeI CATATG 1 cut(s) 388
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 2 cut(s) 292, 430
PfeI GAWTC 1 cut(s) 476
PkrI GCNGC 3 cut(s) 325, 328, 331
PspN4I GGNNCC 2 cut(s) 292, 430
PstI CTGCAG 2 cut(s) 328, 334
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 329
SatI GCNGC 3 cut(s) 324, 327, 330
Sau3AI GATC 1 cut(s) 169
SfcI CTRYAG 2 cut(s) 324, 330
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 2 cut(s) 245, 375
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 67, 428, 516, 523
TaqI TCGA 2 cut(s) 192, 258
TaqII GACCGA 1 cut(s) 458
TasI AATT 2 cut(s) 245, 375
TfiI GAWTC 1 cut(s) 476
TseI GCWGC 3 cut(s) 323, 326, 329
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.