RchiOBHm_Chr1g0375171

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
62693129 .. 62693777
649 bp
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UTR
Exon/CDS
Intron
PRQ59891

Sequence Viewer

Length: 345 bp
ATGTCAAGTAAGCTAAAGTGCCAGGTAAATGGATGGCCTGACAAGGAGTACGAGAACTGGCGATGGAAGCCTTTTCAGTGTGACCTCCCACCGTTTGATGCCATAAAATTTCTTGAACTGATGAGAGGGAAGACAATAGCTTTCATCGGCGATTCAATCAATCGAGGCCACATGGAATCCTTACTCTGCACTCTCAAACATGCATTTGTAGAAGTTCCAGAAATGGGAAGCAACAGTAGAATGCAAACCTACACTTTCAAGTCCTCATTCGTGACAATTGTTCGAATTTGGTCCTCACGGCTCATCAAAGAAGCACATGGAGATTTCGCCCCGATGGTGTGTTGA

Protein Analysis

114

Amino Acids

13.24

Weight (kDa)

8.75

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 2 - 28 1.2e-06 PMR5 N terminal Domain
PC-Esterase PF13839 29 - 105 5.7e-20 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021324)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0375171
rosa_multiflora Rmu_sc0002456.1_g000003
rosa_samantha Rh1BG365000 Rh1CG377900 Rh1DG395700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 107, 285
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 116, 156, 259
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 13, 140
AluI AGCT 2 cut(s) 13, 140
AoxI GGCC 2 cut(s) 35, 166
ApoI RAATTY 2 cut(s) 107, 285
AspS9I GGNCC 1 cut(s) 291
AsuII TTCGAA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 137
BccI CCATC 3 cut(s) 27, 57, 328
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 2 cut(s) 37, 168
BslI CCNNNNNNNGG 1 cut(s) 224
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 2 cut(s) 37, 168
Bsp119I TTCGAA 1 cut(s) 283
BspANI GGCC 2 cut(s) 37, 168
BspT104I TTCGAA 1 cut(s) 283
BsrI ACTGG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 93, 236
BstBI TTCGAA 1 cut(s) 283
BstF5I GGATG 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 2 cut(s) 37, 168
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 172, 200, 317
CviJI RGCY 6 cut(s) 13, 37, 70, 140, 168, 301
CviKI_1 RGCY 6 cut(s) 13, 37, 70, 140, 168, 301
CviQI GTAC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 205
FaeI CATG 3 cut(s) 175, 203, 320
FaiI YATR 4 cut(s) 104, 173, 201, 318
FatI CATG 3 cut(s) 171, 199, 316
FokI GGATG 1 cut(s) 45
HaeIII GGCC 2 cut(s) 37, 168
Hin1II CATG 3 cut(s) 175, 203, 320
HinfI GANTC 2 cut(s) 152, 176
Hpy188III TCNNGA 3 cut(s) 113, 218, 271
HpyCH4III ACNGT 2 cut(s) 93, 236
HpyCH4V TGCA 3 cut(s) 189, 203, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
Hsp92II CATG 3 cut(s) 175, 203, 320
LpnPI CCDG 5 cut(s) 8, 35, 43, 51, 231
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 80, 271
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 276
MluCI AATT 3 cut(s) 107, 276, 285
MnlI CCTC 5 cut(s) 95, 119, 158, 274, 304
Mph1103I ATGCAT 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIII CATG 3 cut(s) 175, 203, 320
NmuCI GTSAC 2 cut(s) 80, 271
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 1 cut(s) 203
NspV TTCGAA 1 cut(s) 283
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 152, 176
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 291
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 23
SetI ASST 5 cut(s) 15, 27, 87, 142, 251
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 1 cut(s) 291
Sse9I AATT 3 cut(s) 107, 276, 285
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 93, 236
TaqI TCGA 2 cut(s) 163, 283
TasI AATT 3 cut(s) 107, 276, 285
TfiI GAWTC 2 cut(s) 152, 176
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 80, 271
Tsp45I GTSAC 2 cut(s) 80, 271
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 2 cut(s) 107, 285
XceI RCATGY 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.