Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021324

Physical Location & Seq

Genomic Coordinates Forward (+)

64695407 .. 64699309

Gene Structure 3903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG377900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCAAGTAAGCTAAAGTGCCAGGTAAATGGGAGGCCTGACAAGGAGTACAAGAACTGGCGATGGAAGCCTTCTCAGTGTGACCTCCCACCATTTGATGCCATAAAATTTCTTGAACTGATGAGAGGGAAGACAATAGCTTTCATCAGCGATTCAATCAATCGAGGCCACATGGAATCCTTACTCTGCACTCTCCAACAGGCATTTATCTTCACATTCCCAGAACCTCACTCCATTCTTCGTTTTCCTCAACTTCCACGCTCAAAAATAGAATCTTTCCGGGTCGGAAACTCTCTTTTCCGTCCGCCGTTAACTCCTCCTTCTCCGGTAGCTGCCACCGTCACGGAGATTGCTCAAGTTTCCGATCTTCGGCGATCCTGGATTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007568 GO:0008150 GO:0008374 GO:0009987 GO:0010150 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071554 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

129

Amino Acids

14.89

Weight (kDa)

9.94

Isoelectric Point (pI)

70.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	2 - 28	7.1e-09	PMR5 N terminal Domain
PC-Esterase	PF13839	29 - 73	4.3e-14	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021324)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0375171
rosa_multiflora	Rmu_sc0002456.1_g000003
rosa_samantha	Rh1BG365000 Rh1CG377900 Rh1DG395700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	116, 156
AjnI	CCWGG	2 cut(s)	21, 377
AluBI	AGCT	3 cut(s)	13, 140, 332
AluI	AGCT	3 cut(s)	13, 140, 332
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	35, 166
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	23, 379
BcnI	CCSGG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	3 cut(s)	23, 281, 379
BmrFI	CCNGG	3 cut(s)	23, 281, 379
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	23, 379
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	37, 168
BsiSI	CCGG	2 cut(s)	280, 326
BslI	CCNNNNNNNGG	1 cut(s)	369
BsnI	GGCC	2 cut(s)	37, 168
Bsp143I	GATC	2 cut(s)	364, 374
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	37, 168
BspCNI	CTCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	364, 374
Bst2UI	CCWGG	2 cut(s)	23, 379
Bst4CI	ACNGT	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	367, 377
BstMBI	GATC	2 cut(s)	364, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	23, 379
BstSCI	CCNGG	3 cut(s)	21, 279, 377
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	37, 168
BtgZI	GCGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	6 cut(s)	13, 37, 70, 140, 168, 332
CviKI_1	RGCY	6 cut(s)	13, 37, 70, 140, 168, 332
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	366, 376
DpnII	GATC	2 cut(s)	364, 374
EciI	GGCGGA	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	21, 377
FaeI	CATG	1 cut(s)	175
FaiI	YATR	2 cut(s)	104, 173
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	37, 168
HapII	CCGG	2 cut(s)	280, 326
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	4 cut(s)	152, 176, 272, 382
HpaI	GTTAAC	1 cut(s)	312
HpaII	CCGG	2 cut(s)	280, 326
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	287, 364
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	81, 330
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	364, 374
LpnPI	CCDG	9 cut(s)	8, 35, 43, 51, 185, 234, 293, 339, 364
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	80, 340
MalI	GATC	2 cut(s)	366, 376
MboI	GATC	2 cut(s)	364, 374
MboII	GAAGA	4 cut(s)	142, 202, 230, 359
MluCI	AATT	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	220, 265
MnlI	CCTC	7 cut(s)	27, 95, 119, 158, 237, 258, 327
MseI	TTAA	1 cut(s)	311
MspI	CCGG	2 cut(s)	280, 326
MspR9I	CCNGG	3 cut(s)	23, 281, 379
MvaI	CCWGG	2 cut(s)	23, 379
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	364, 374
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	80, 340
PceI	AGGCCT	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	152, 176, 272, 382
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	21, 377
PspGI	CCWGG	2 cut(s)	21, 377
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	364, 374
ScrFI	CCNGG	3 cut(s)	23, 281, 379
SetI	ASST	6 cut(s)	15, 27, 87, 142, 229, 334
SfaNI	GCATC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	3 cut(s)	21, 279, 377
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	107
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	152, 176, 272, 382
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	80, 340
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	80, 340
TspDTI	ATGAA	1 cut(s)	133
TspGWI	ACGGA	2 cut(s)	290, 359
TspRI	CASTG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.