divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0377101 RchiOBHm_Chr2g0175031 |
| rosa_samantha | Rh5DG251800 Rh5DG562800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 47 |
| AccII | CGCG | 1 cut(s) | 265 |
| AciI | CCGC | 1 cut(s) | 82 |
| AcsI | RAATTY | 4 cut(s) | 182, 335, 442, 557 |
| AcyI | GRCGYC | 1 cut(s) | 217 |
| AdeI | CACNNNGTG | 1 cut(s) | 211 |
| AfaI | GTAC | 1 cut(s) | 165 |
| AgsI | TTSAA | 6 cut(s) | 25, 130, 299, 340, 366, 563 |
| AluBI | AGCT | 4 cut(s) | 94, 158, 352, 453 |
| AluI | AGCT | 4 cut(s) | 94, 158, 352, 453 |
| Ama87I | CYCGRG | 1 cut(s) | 133 |
| ApeKI | GCWGC | 1 cut(s) | 349 |
| ApoI | RAATTY | 4 cut(s) | 182, 335, 442, 557 |
| AsuHPI | GGTGA | 1 cut(s) | 501 |
| AvaI | CYCGRG | 1 cut(s) | 133 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 147, 179 |
| BbsI | GAAGAC | 2 cut(s) | 50, 402 |
| BbvI | GCAGC | 1 cut(s) | 361 |
| BccI | CCATC | 1 cut(s) | 241 |
| BfaI | CTAG | 2 cut(s) | 167, 504 |
| BisI | GCNGC | 2 cut(s) | 82, 350 |
| BlsI | GCNGC | 2 cut(s) | 83, 351 |
| BmeT110I | CYCGRG | 1 cut(s) | 133 |
| BmsI | GCATC | 4 cut(s) | 287, 372, 421, 536 |
| BpiI | GAAGAC | 2 cut(s) | 50, 402 |
| BpmI | CTGGAG | 1 cut(s) | 258 |
| BsaBI | GATNNNNATC | 1 cut(s) | 298 |
| BsaHI | GRCGYC | 1 cut(s) | 217 |
| Bse118I | RCCGGY | 1 cut(s) | 256 |
| Bse8I | GATNNNNATC | 1 cut(s) | 298 |
| BseGI | GGATG | 1 cut(s) | 551 |
| BseJI | GATNNNNATC | 1 cut(s) | 298 |
| BseMII | CTCAG | 4 cut(s) | 84, 104, 117, 255 |
| BseXI | GCAGC | 1 cut(s) | 361 |
| Bsh1236I | CGCG | 1 cut(s) | 265 |
| BsiHKCI | CYCGRG | 1 cut(s) | 133 |
| BsiSI | CCGG | 1 cut(s) | 257 |
| BsoBI | CYCGRG | 1 cut(s) | 133 |
| Bsp143I | GATC | 2 cut(s) | 196, 266 |
| BspACI | CCGC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 4 cut(s) | 83, 103, 116, 254 |
| BspFNI | CGCG | 1 cut(s) | 265 |
| BsrFI | RCCGGY | 1 cut(s) | 256 |
| BssAI | RCCGGY | 1 cut(s) | 256 |
| BssMI | GATC | 2 cut(s) | 196, 266 |
| BssNI | GRCGYC | 1 cut(s) | 217 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| BstACI | GRCGYC | 1 cut(s) | 217 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstDEI | CTNAG | 4 cut(s) | 70, 90, 103, 241 |
| BstF5I | GGATG | 1 cut(s) | 551 |
| BstFNI | CGCG | 1 cut(s) | 265 |
| BstKTI | GATC | 2 cut(s) | 199, 269 |
| BstMBI | GATC | 2 cut(s) | 196, 266 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 257, 262, 459 |
| BstNSI | RCATGY | 1 cut(s) | 438 |
| BstUI | CGCG | 1 cut(s) | 265 |
| BstV1I | GCAGC | 1 cut(s) | 361 |
| BstV2I | GAAGAC | 2 cut(s) | 50, 402 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 519 |
| BtsCI | GGATG | 1 cut(s) | 551 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| Cfr10I | RCCGGY | 1 cut(s) | 256 |
| CseI | GACGC | 1 cut(s) | 206 |
| Csp6I | GTAC | 1 cut(s) | 164 |
| CviAII | CATG | 2 cut(s) | 435, 527 |
| CviJI | RGCY | 7 cut(s) | 81, 94, 158, 251, 352, 453, 502 |
| CviKI_1 | RGCY | 7 cut(s) | 81, 94, 158, 251, 352, 453, 502 |
| CviQI | GTAC | 1 cut(s) | 164 |
| DdeI | CTNAG | 4 cut(s) | 70, 90, 103, 241 |
| DpnI | GATC | 2 cut(s) | 198, 268 |
| DpnII | GATC | 2 cut(s) | 196, 266 |
| DraIII | CACNNNGTG | 1 cut(s) | 211 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 47 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 47 |
| Eco88I | CYCGRG | 1 cut(s) | 133 |
| EcoRI | GAATTC | 1 cut(s) | 182 |
| EcoT22I | ATGCAT | 1 cut(s) | 436 |
| FaeI | CATG | 2 cut(s) | 438, 530 |
| FaiI | YATR | 4 cut(s) | 176, 436, 456, 528 |
| FatI | CATG | 2 cut(s) | 434, 526 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 350 |
| FokI | GGATG | 1 cut(s) | 558 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 350 |
| FspBI | CTAG | 2 cut(s) | 167, 504 |
| GluI | GCNGC | 2 cut(s) | 82, 350 |
| GsuI | CTGGAG | 1 cut(s) | 258 |
| HapII | CCGG | 1 cut(s) | 257 |
| HgaI | GACGC | 1 cut(s) | 206 |
| Hin1I | GRCGYC | 1 cut(s) | 217 |
| Hin1II | CATG | 2 cut(s) | 438, 530 |
| HincII | GTYRAC | 1 cut(s) | 221 |
| HindII | GTYRAC | 1 cut(s) | 221 |
| HinfI | GANTC | 5 cut(s) | 201, 523, 578, 587, 603 |
| HpaII | CCGG | 1 cut(s) | 257 |
| HphI | GGTGA | 1 cut(s) | 501 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 509 |
| Hpy188I | TCNGA | 3 cut(s) | 583, 592, 608 |
| Hpy188III | TCNNGA | 1 cut(s) | 116 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 509 |
| Hpy99I | CGWCG | 1 cut(s) | 587 |
| HpyAV | CCTTC | 1 cut(s) | 404 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 4 cut(s) | 349, 434, 480, 549 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 257, 262, 459 |
| HpyF3I | CTNAG | 4 cut(s) | 70, 90, 103, 241 |
| Hsp92I | GRCGYC | 1 cut(s) | 217 |
| Hsp92II | CATG | 2 cut(s) | 438, 530 |
| KroI | GCCGGC | 1 cut(s) | 256 |
| KroNI | GCCGGC | 1 cut(s) | 258 |
| Kzo9I | GATC | 2 cut(s) | 196, 266 |
| LpnPI | CCDG | 6 cut(s) | 51, 101, 146, 270, 288, 525 |
| Lsp1109I | GCAGC | 1 cut(s) | 361 |
| LweI | GCATC | 4 cut(s) | 287, 372, 421, 536 |
| MaeI | CTAG | 2 cut(s) | 167, 504 |
| MalI | GATC | 2 cut(s) | 198, 268 |
| MboI | GATC | 2 cut(s) | 196, 266 |
| MboII | GAAGA | 6 cut(s) | 50, 182, 261, 273, 407, 419 |
| MlyI | GAGTC | 1 cut(s) | 596 |
| MmeI | TCCRAC | 3 cut(s) | 159, 555, 606 |
| MnlI | CCTC | 5 cut(s) | 53, 79, 112, 207, 248 |
| Mph1103I | ATGCAT | 1 cut(s) | 436 |
| MroNI | GCCGGC | 1 cut(s) | 256 |
| MseI | TTAA | 1 cut(s) | 498 |
| MspA1I | CMGCKG | 1 cut(s) | 352 |
| MspI | CCGG | 1 cut(s) | 257 |
| MvnI | CGCG | 1 cut(s) | 265 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 257, 262, 459 |
| NaeI | GCCGGC | 1 cut(s) | 258 |
| NdeII | GATC | 2 cut(s) | 196, 266 |
| NgoMIV | GCCGGC | 1 cut(s) | 256 |
| NlaIII | CATG | 2 cut(s) | 438, 530 |
| NsiI | ATGCAT | 1 cut(s) | 436 |
| NspI | RCATGY | 1 cut(s) | 438 |
| PdiI | GCCGGC | 1 cut(s) | 258 |
| PfeI | GAWTC | 4 cut(s) | 201, 523, 578, 603 |
| PkrI | GCNGC | 2 cut(s) | 83, 351 |
| PleI | GAGTC | 1 cut(s) | 595 |
| PpsI | GAGTC | 1 cut(s) | 595 |
| PvuII | CAGCTG | 1 cut(s) | 352 |
| RsaI | GTAC | 1 cut(s) | 165 |
| RsaNI | GTAC | 1 cut(s) | 164 |
| SaqAI | TTAA | 1 cut(s) | 498 |
| SatI | GCNGC | 2 cut(s) | 82, 350 |
| Sau3AI | GATC | 2 cut(s) | 196, 266 |
| SchI | GAGTC | 1 cut(s) | 596 |
| SfaNI | GCATC | 4 cut(s) | 287, 372, 421, 536 |
| SsiI | CCGC | 1 cut(s) | 82 |
| SspI | AATATT | 1 cut(s) | 29 |
| SspMI | CTAG | 2 cut(s) | 167, 504 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 4 cut(s) | 45, 199, 292, 539 |
| TauI | GCSGC | 1 cut(s) | 84 |
| TfiI | GAWTC | 4 cut(s) | 201, 523, 578, 603 |
| Tru1I | TTAA | 1 cut(s) | 498 |
| Tru9I | TTAA | 1 cut(s) | 498 |
| TscAI | CASTG | 1 cut(s) | 249 |
| TseI | GCWGC | 1 cut(s) | 349 |
| TspRI | CASTG | 1 cut(s) | 249 |
| XapI | RAATTY | 4 cut(s) | 182, 335, 442, 557 |
| XceI | RCATGY | 1 cut(s) | 438 |
| XspI | CTAG | 2 cut(s) | 167, 504 |
| Zsp2I | ATGCAT | 1 cut(s) | 436 |