Rh5DG251800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
29066472 .. 29066903
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG251800.1

Sequence Viewer

Length: 432 bp
ATGTCAATAACTACCGTTGGGTTCAAATATTGCCCCCCAGACCTAGAAGTCAAAGGTCTTCGTCTTACCTCAGTTGAGAGCCGCAGAACTCAGCTACCTACCTCAGTTTTCTATCAGGAGAAAAAATTGAACTCGGGTTCTTTACTCCTAACAGAAGCTCTGGTACTAGAAGATATGTTAGAATTCGCTATTACAGATCGAATCCACAATGTGAGGCGTCAACCACCCAATTATTCCCTCTCAGTGATGGCTTCGCCGGCAACGCGATCTTCTCCATCATCTTCTCTGCTTCGATTTCAATCAAAAATCCCAAAACCCACAATCCAAAAAATCAAATTCAATTATTTGCAGCTGAAATCAATTTCAATTTTTCTTTTTTTGATGGGTTTGGGAGAAGACAATAGAGAAGAAGGAAAGAAAAGTCGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.24

Weight (kDa)

9.71

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022622)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0377101 RchiOBHm_Chr2g0175031
rosa_samantha Rh5DG251800 Rh5DG562800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccII CGCG 1 cut(s) 265
AciI CCGC 1 cut(s) 82
AcsI RAATTY 2 cut(s) 182, 335
AcyI GRCGYC 1 cut(s) 217
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 5 cut(s) 25, 130, 299, 340, 366
AluBI AGCT 3 cut(s) 94, 158, 352
AluI AGCT 3 cut(s) 94, 158, 352
Ama87I CYCGRG 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 2 cut(s) 182, 335
AvaI CYCGRG 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 2 cut(s) 50, 402
BbvI GCAGC 1 cut(s) 361
BccI CCATC 3 cut(s) 241, 283, 376
BfaI CTAG 2 cut(s) 44, 167
BisI GCNGC 2 cut(s) 82, 350
BlsI GCNGC 2 cut(s) 83, 351
BmeT110I CYCGRG 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 50, 402
BsaBI GATNNNNATC 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 298
BseMII CTCAG 4 cut(s) 84, 104, 117, 255
BseXI GCAGC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 133
Bsp143I GATC 2 cut(s) 196, 266
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 4 cut(s) 83, 103, 116, 254
BspFNI CGCG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssMI GATC 2 cut(s) 196, 266
BssNI GRCGYC 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 70, 90, 103, 241
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 2 cut(s) 199, 269
BstMBI GATC 2 cut(s) 196, 266
BstMWI GCNNNNNNNGC 2 cut(s) 257, 262
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 2 cut(s) 50, 402
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 256
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 5 cut(s) 81, 94, 158, 251, 352
CviKI_1 RGCY 5 cut(s) 81, 94, 158, 251, 352
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 4 cut(s) 70, 90, 103, 241
DpnI GATC 2 cut(s) 198, 268
DpnII GATC 2 cut(s) 196, 266
DraIII CACNNNGTG 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 182
FaiI YATR 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 82, 350
Fsp4HI GCNGC 2 cut(s) 82, 350
FspBI CTAG 2 cut(s) 44, 167
GluI GCNGC 2 cut(s) 82, 350
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 1 cut(s) 201
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 116, 425
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 262
HpyF3I CTNAG 4 cut(s) 70, 90, 103, 241
Hsp92I GRCGYC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 196, 266
LpnPI CCDG 4 cut(s) 51, 101, 146, 270
Lsp1109I GCAGC 1 cut(s) 361
MaeI CTAG 2 cut(s) 44, 167
MalI GATC 2 cut(s) 198, 268
MboI GATC 2 cut(s) 196, 266
MboII GAAGA 6 cut(s) 50, 182, 261, 273, 407, 419
MluCI AATT 7 cut(s) 125, 182, 229, 335, 340, 360, 366
MnlI CCTC 4 cut(s) 79, 112, 207, 248
MroNI GCCGGC 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 257, 262
NaeI GCCGGC 1 cut(s) 258
NdeII GATC 2 cut(s) 196, 266
NgoMIV GCCGGC 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 83, 351
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SatI GCNGC 2 cut(s) 82, 350
Sau3AI GATC 2 cut(s) 196, 266
SetI ASST 8 cut(s) 45, 58, 71, 96, 100, 104, 160, 354
SgeI CNNG 9 cut(s) 50, 56, 128, 145, 147, 173, 179, 269, 276
Sse9I AATT 7 cut(s) 125, 182, 229, 335, 340, 360, 366
SsiI CCGC 1 cut(s) 82
SspI AATATT 1 cut(s) 29
SspMI CTAG 2 cut(s) 44, 167
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 199, 292
TasI AATT 7 cut(s) 125, 182, 229, 335, 340, 360, 366
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 201
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 349
TspRI CASTG 1 cut(s) 249
XapI RAATTY 2 cut(s) 182, 335
XspI CTAG 2 cut(s) 44, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.