RchiOBHm_Chr2g0175031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022622
Physical Location & Seq
Reverse (-)
87431330 .. 87432418
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54213

Sequence Viewer

Length: 549 bp
ATGTCAATAACTACCGTTGGGTTCAAATATTGCCCCCCAGACCTCGAAGTCAAAGGTCTTCGTCTTACCTCAGTTGAGAGCCGCAGAACTCAGCTACCTACCTCAGTTTTCTATCAGGAGAAAAAATTGAACTCGGGTTCTTTACTCCTAACAGAAGCTCTGGTACTAGAAGATATGTTGGAATTCGCTATTACAGATCGAATCCACAATGTGAGGCGTCAACCACCCAATTATTCCCTCTCAGTGATGGCTTCGCCGGCAACGCGATCTTCTCCAGCATCTTCTCTGCTTCGATTTCAATCAAAAATCCCAAAACCCACAATCCAAAAAATCAAATTCAATTATTTGCAGCTGAAATCAATTTCAATTTTTCTTTTTTTGATGGGTTTGGGAGAAGACAACAGAGAAGAAGGAAAGAAAGTCGTGATTAGTTATTGGCATACTTTTCTGGTACTGTTCAACGGAGTCAACCGTTTTACTGTTCCTAGGTATGAATATTCGGTCGGGCTTAAATCGTCAGGTACCATTTTGATATTTTTCAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.75

Weight (kDa)

9.83

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022622)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0377101 RchiOBHm_Chr2g0175031
rosa_samantha Rh5DG251800 Rh5DG562800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccII CGCG 1 cut(s) 265
AciI CCGC 1 cut(s) 82
AcsI RAATTY 2 cut(s) 182, 335
AcyI GRCGYC 1 cut(s) 217
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 3 cut(s) 165, 453, 523
AgsI TTSAA 7 cut(s) 25, 130, 299, 340, 366, 460, 541
AluBI AGCT 3 cut(s) 94, 158, 352
AluI AGCT 3 cut(s) 94, 158, 352
Ama87I CYCGRG 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 2 cut(s) 182, 335
Asp718I GGTACC 1 cut(s) 521
AspA2I CCTAGG 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 133
AvrII CCTAGG 1 cut(s) 485
BanI GGYRCC 1 cut(s) 521
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 2 cut(s) 50, 402
BbvI GCAGC 1 cut(s) 361
BccI CCATC 2 cut(s) 241, 376
BfaI CTAG 2 cut(s) 167, 486
BisI GCNGC 2 cut(s) 82, 350
BlnI CCTAGG 1 cut(s) 485
BlsI GCNGC 2 cut(s) 83, 351
BmeT110I CYCGRG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 523
BmsI GCATC 1 cut(s) 287
BpiI GAAGAC 2 cut(s) 50, 402
BpmI CTGGAG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 485
Bse118I RCCGGY 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 298
BseMII CTCAG 4 cut(s) 84, 104, 117, 255
BseXI GCAGC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 504
BshNI GGYRCC 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 133
Bsp143I GATC 2 cut(s) 196, 266
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 4 cut(s) 83, 103, 116, 254
BspFNI CGCG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 2 cut(s) 196, 266
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 485
Bst4CI ACNGT 4 cut(s) 16, 456, 473, 481
BstACI GRCGYC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 70, 90, 103, 241
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 2 cut(s) 199, 269
BstMBI GATC 2 cut(s) 196, 266
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 2 cut(s) 257, 262
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 2 cut(s) 50, 402
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 256
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 164, 452, 522
CviJI RGCY 6 cut(s) 81, 94, 158, 251, 352, 508
CviKI_1 RGCY 6 cut(s) 81, 94, 158, 251, 352, 508
CviQI GTAC 3 cut(s) 164, 452, 522
DdeI CTNAG 4 cut(s) 70, 90, 103, 241
DpnI GATC 2 cut(s) 198, 268
DpnII GATC 2 cut(s) 196, 266
DraIII CACNNNGTG 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaiI YATR 4 cut(s) 176, 441, 492, 547
Fnu4HI GCNGC 2 cut(s) 82, 350
Fsp4HI GCNGC 2 cut(s) 82, 350
FspBI CTAG 2 cut(s) 167, 486
GluI GCNGC 2 cut(s) 82, 350
GsuI CTGGAG 1 cut(s) 258
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 217
HincII GTYRAC 2 cut(s) 221, 469
HindII GTYRAC 2 cut(s) 221, 469
HinfI GANTC 2 cut(s) 201, 465
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 221, 469
Hpy188III TCNNGA 2 cut(s) 116, 424
Hpy8I GTNNAC 2 cut(s) 221, 469
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 4 cut(s) 16, 456, 473, 481
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 262
HpyF3I CTNAG 4 cut(s) 70, 90, 103, 241
Hsp92I GRCGYC 1 cut(s) 217
KpnI GGTACC 1 cut(s) 525
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 196, 266
LpnPI CCDG 7 cut(s) 51, 101, 146, 270, 288, 434, 504
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 287
MaeI CTAG 2 cut(s) 167, 486
MalI GATC 2 cut(s) 198, 268
MboI GATC 2 cut(s) 196, 266
MboII GAAGA 6 cut(s) 50, 182, 261, 273, 407, 419
MluCI AATT 7 cut(s) 125, 182, 229, 335, 340, 360, 366
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 5 cut(s) 53, 79, 112, 207, 248
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 257, 262
NaeI GCCGGC 1 cut(s) 258
NdeII GATC 2 cut(s) 196, 266
NgoMIV GCCGGC 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 523
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 83, 351
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 3 cut(s) 165, 453, 523
RsaNI GTAC 3 cut(s) 164, 452, 522
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 2 cut(s) 82, 350
Sau3AI GATC 2 cut(s) 196, 266
SchI GAGTC 1 cut(s) 474
SfaNI GCATC 1 cut(s) 287
Sse9I AATT 7 cut(s) 125, 182, 229, 335, 340, 360, 366
SsiI CCGC 1 cut(s) 82
SspI AATATT 2 cut(s) 29, 497
SspMI CTAG 2 cut(s) 167, 486
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 4 cut(s) 16, 456, 473, 481
TaqI TCGA 3 cut(s) 45, 199, 292
TaqII GACCGA 1 cut(s) 490
TasI AATT 7 cut(s) 125, 182, 229, 335, 340, 360, 366
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 507
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 249
XapI RAATTY 2 cut(s) 182, 335
XmaJI CCTAGG 1 cut(s) 485
XspI CTAG 2 cut(s) 167, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.