RchiOBHm_Chr2g0093951

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022677
Physical Location & Seq
Forward (+)
7032518 .. 7035172
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46898

Sequence Viewer

Length: 702 bp
ATGGCACTGCTCTGTCATTCAGCAGGCTTGGCATACTTTGATAAGGAAGACAGAAACAAATCTCGTATGCGTGAAGGCATGACCGAGTTCACAACAGAAGCCCGGCAGATAGTAAGCCATTGTTCCGGATCTCCCCTTGCCATAACAGTGGTGGGGAAATCGCTTTGTGGGAAACCTGCACACGTTTGGAGAAGGAAAGCATTCGAATTGGATTATCATAATACTATTTTAGACACTGACATTACTTTGTTGTCGTGCCTCCAAAGTACTTTTGAAGACATGGATAAAGAACTCCAAGCTGCATACTTGGACCTTGCCGTACTCCCAAATAAATTTTTGGACTGTCTTGGTACTGCAGTTGATGTATGGGCAGAGTTGCAGAGTCATCTGCTTGATAATGTCCTTTTCTGCACTACAACTTTCCACGAACTGAGCGCCTGGCATTTGGTATTTCTTCAATACTCTTCGGATAAAAGGTTCTTTCAGAATGAGAGAATAGATGATTACTGGTTCCGTCATGTTCGACTTGTTCAGAGAGTATGCTTGCTGCCTAGCCAGTTTGGATCCAATAGAAGAGAGACAGAGATTGATTTTAGAAGTATTTGGAAAAAATATTCCCAAGTGGTTGAGAGAACTGAAGGATCAGCCATTGAAGGCGCAGCTACTGTCTATCTCAACAGGAATGTTGTGTGTGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

233

Amino Acids

26.83

Weight (kDa)

6.24

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022677)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0093951
rosa_roxburghii Rroxscaffold_2G00147580
rosa_samantha Rh2AG087600 Rh2DG086200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccIII TCCGGA 1 cut(s) 125
AclWI GGATC 4 cut(s) 136, 558, 571, 649
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 3 cut(s) 268, 321, 352
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 3 cut(s) 275, 458, 653
AjnI CCWGG 1 cut(s) 437
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 2 cut(s) 299, 662
AluI AGCT 2 cut(s) 299, 662
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 4 cut(s) 136, 558, 571, 649
AlwNI CAGNNNCTG 1 cut(s) 665
Aor13HI TCCGGA 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 299, 547, 659
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 2 cut(s) 437, 659
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 310
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BamHI GGATCC 1 cut(s) 563
BbsI GAAGAC 2 cut(s) 54, 282
BbvI GCAGC 3 cut(s) 286, 534, 671
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 439
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 3 cut(s) 300, 548, 660
BlsI GCNGC 3 cut(s) 301, 549, 661
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 103, 439
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 512, 565
BmrFI CCNGG 2 cut(s) 103, 439
BpiI GAAGAC 2 cut(s) 54, 282
Bpu14I TTCGAA 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 512, 556
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 512, 556
BseXI GCAGC 3 cut(s) 286, 534, 671
BsgI GTGCAG 2 cut(s) 162, 394
BsiSI CCGG 2 cut(s) 103, 126
BsmAI GTCTC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 3 cut(s) 128, 563, 641
BspCNI CTCAG 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 512, 565
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 4 cut(s) 136, 558, 571, 649
BspT104I TTCGAA 1 cut(s) 204
BsrI ACTGG 2 cut(s) 512, 556
BssMI GATC 3 cut(s) 128, 563, 641
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 3 cut(s) 148, 344, 667
Bst6I CTCTTC 2 cut(s) 469, 568
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 25, 545
BstDEI CTNAG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 2 cut(s) 437, 659
BstKTI GATC 3 cut(s) 131, 566, 644
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 3 cut(s) 128, 563, 641
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 101, 437
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 3 cut(s) 286, 534, 671
BstV2I GAAGAC 2 cut(s) 54, 282
BstX2I RGATCY 2 cut(s) 128, 563
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 2 cut(s) 128, 563
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 3 cut(s) 5, 153, 234
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 25, 545
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 2 cut(s) 437, 659
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 267, 320, 351
CviAII CATG 3 cut(s) 79, 280, 518
CviJI RGCY 7 cut(s) 27, 101, 117, 299, 555, 647, 662
CviKI_1 RGCY 7 cut(s) 27, 101, 117, 299, 555, 647, 662
CviQI GTAC 3 cut(s) 267, 320, 351
DdeI CTNAG 1 cut(s) 431
DpnI GATC 3 cut(s) 130, 565, 643
DpnII GATC 3 cut(s) 128, 563, 641
Eam1104I CTCTTC 2 cut(s) 469, 568
EarI CTCTTC 2 cut(s) 469, 568
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 82, 283, 521
FatI CATG 3 cut(s) 78, 279, 517
Fnu4HI GCNGC 3 cut(s) 300, 548, 660
Fsp4HI GCNGC 3 cut(s) 300, 548, 660
FspBI CTAG 1 cut(s) 552
GlaI GCGC 2 cut(s) 436, 658
GluI GCNGC 3 cut(s) 300, 548, 660
HaeII RGCGCY 1 cut(s) 438
HapII CCGG 2 cut(s) 103, 126
HhaI GCGC 2 cut(s) 437, 659
Hin1II CATG 3 cut(s) 82, 283, 521
Hin6I GCGC 2 cut(s) 435, 657
HinP1I GCGC 2 cut(s) 435, 657
HinfI GANTC 1 cut(s) 382
HpaII CCGG 2 cut(s) 103, 126
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 469, 486, 534
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 4 cut(s) 68, 186, 632, 647
HpyCH4III ACNGT 3 cut(s) 148, 344, 667
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 5 cut(s) 179, 302, 356, 379, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 3 cut(s) 82, 283, 521
HspAI GCGC 2 cut(s) 435, 657
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 3 cut(s) 128, 563, 641
LpnPI CCDG 9 cut(s) 9, 116, 139, 189, 424, 451, 493, 569, 664
Lsp1109I GCAGC 3 cut(s) 286, 534, 671
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 183
MalI GATC 3 cut(s) 130, 565, 643
MboI GATC 3 cut(s) 128, 563, 641
MboII GAAGA 5 cut(s) 59, 287, 446, 456, 585
MflI RGATCY 2 cut(s) 128, 563
MluCI AATT 2 cut(s) 206, 332
MlyI GAGTC 1 cut(s) 391
MnlI CCTC 1 cut(s) 269
MroI TCCGGA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 103, 126
MspR9I CCNGG 2 cut(s) 103, 439
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 103
NdeII GATC 3 cut(s) 128, 563, 641
NlaIII CATG 3 cut(s) 82, 283, 521
NlaIV GGNNCC 2 cut(s) 512, 565
NspV TTCGAA 1 cut(s) 204
PctI GAATGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 301, 549, 661
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 512, 565
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 2 cut(s) 128, 563
RsaI GTAC 3 cut(s) 268, 321, 352
RsaNI GTAC 3 cut(s) 267, 320, 351
RseI CAYNNNNRTG 1 cut(s) 146
SatI GCNGC 3 cut(s) 300, 548, 660
Sau3AI GATC 3 cut(s) 128, 563, 641
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 103, 439
SetI ASST 6 cut(s) 178, 186, 301, 315, 479, 664
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 2 cut(s) 206, 332
SspI AATATT 1 cut(s) 614
SspMI CTAG 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 101, 437
TaaI ACNGT 3 cut(s) 148, 344, 667
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 204, 523
TaqII GACCGA 1 cut(s) 98
TasI AATT 2 cut(s) 206, 332
TatI WGTACW 1 cut(s) 266
TscAI CASTG 3 cut(s) 12, 153, 241
TseI GCWGC 3 cut(s) 299, 547, 659
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 3 cut(s) 12, 153, 241
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 552
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.