RchiOBHm_Chr2g0094951

Flavonoid 3-hydroxylase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
7828219 .. 7828416
198 bp
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UTR
Exon/CDS
Intron
PRQ46994

Sequence Viewer

Length: 198 bp
ATGTGCCCAGGTTATAGCCTTGGATTGAAACTGATTCGGTCTAGCATAGCTAACATGCTTCATGGATTCAACAGGAAATTGCCTGAGAATATGAAACCAGAAGTTCTGAGCATGGATGAAGTTTATGGATTGGCAACACCAAGGAAGTTTCCACTTGTTGCAGTCGTGGAGCCTAGGCTCCCAAACCATCTTTATTAA

Protein Analysis

65

Amino Acids

7.35

Weight (kDa)

9.36

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024883)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0094951
rosa_multiflora Rmu_sc0004316.1_g000010
rosa_samantha Rh2CG434600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 28, 70
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AspA2I CCTAGG 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 8
BccI CCATC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 9
BfaI CTAG 2 cut(s) 42, 174
BlnI CCTAGG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 171, 179
BmrFI CCNGG 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 7, 19, 140, 173
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 4 cut(s) 7, 19, 140, 173
BseGI GGATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 75, 98
BseSI GKGCMC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 76, 99
BspLI GGNNCC 2 cut(s) 171, 179
BssECI CCNNGG 4 cut(s) 7, 19, 140, 173
BssT1I CCWWGG 3 cut(s) 19, 140, 173
Bst2UI CCWGG 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 84, 107
BstF5I GGATG 1 cut(s) 121
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 121
CviAII CATG 3 cut(s) 55, 62, 112
CviJI RGCY 4 cut(s) 18, 50, 172, 178
CviKI_1 RGCY 4 cut(s) 18, 50, 172, 178
DdeI CTNAG 2 cut(s) 84, 107
Eco130I CCWWGG 3 cut(s) 19, 140, 173
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 19, 140, 173
ErhI CCWWGG 3 cut(s) 19, 140, 173
FaeI CATG 3 cut(s) 58, 65, 115
FaiI YATR 7 cut(s) 15, 47, 56, 63, 92, 113, 126
FatI CATG 3 cut(s) 54, 61, 111
FokI GGATG 1 cut(s) 128
FspBI CTAG 2 cut(s) 42, 174
Hin1II CATG 3 cut(s) 58, 65, 115
HinfI GANTC 2 cut(s) 34, 66
Hpy188I TCNGA 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 84, 107
Hsp92II CATG 3 cut(s) 58, 65, 115
LmnI GCTCC 2 cut(s) 169, 183
LpnPI CCDG 4 cut(s) 21, 58, 96, 111
MaeI CTAG 2 cut(s) 42, 174
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 77
MseI TTAA 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
NlaIII CATG 3 cut(s) 58, 65, 115
NlaIV GGNNCC 2 cut(s) 171, 179
NspI RCATGY 1 cut(s) 58
PfeI GAWTC 2 cut(s) 34, 66
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 171, 179
SaqAI TTAA 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 13, 52
Sse9I AATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 42, 174
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 3 cut(s) 19, 140, 173
TaqII GACCGA 1 cut(s) 27
TasI AATT 1 cut(s) 77
TfiI GAWTC 2 cut(s) 34, 66
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 50, 107, 132
XceI RCATGY 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 173
XspI CTAG 2 cut(s) 42, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.