Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0024883

Physical Location & Seq

Genomic Coordinates Reverse (-)

59080153 .. 59080461

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG434600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTGCCCTGGCTACAGTCTTGGCCACAAGCTGATTCACTCAAGTATTGCAAATCTCTTGCATGGATTTAACTGGAGATTTCCTGATAATATGAATAAAGAGGATTTGAGTATGGAGGAAATTTTCGGGCTTTCAACACCAAGGAAGTTTCCCCTCATTGCAGTCACCGAGCCTCGTCTTCCAGCTCATCTTTACTCTGTGATCAAGCCTTGGCTTGAGGCATTGAGCTACTTCCCTTCAAAAAAATCAGTACTGGGATTCCAGCTTCTACTACAAGTTTGCTTGTCTTGTGCACTGTGTCAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

102

Amino Acids

11.59

Weight (kDa)

8.42

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024883)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0094951
rosa_multiflora	Rmu_sc0004316.1_g000010
rosa_samantha	Rh2CG434600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	135, 240
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	4 cut(s)	31, 185, 228, 265
AluI	AGCT	4 cut(s)	31, 185, 228, 265
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	22
ApaLI	GTGCAC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	2 cut(s)	8, 295
BalI	TGGCCA	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	2 cut(s)	25, 236
BsaJI	CCNNGG	3 cut(s)	7, 140, 209
Bse1I	ACTGG	2 cut(s)	77, 258
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	3 cut(s)	7, 140, 209
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	77, 258
BseSI	GKGCMC	2 cut(s)	8, 295
BshFI	GGCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	8, 295
Bsp143I	GATC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	77, 258
BssECI	CCNNGG	3 cut(s)	7, 140, 209
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	140, 209
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	17, 297
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	2 cut(s)	8, 295
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	1 cut(s)	251
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	140, 209
EcoRII	CCWGG	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	140, 209
ErhI	CCWWGG	2 cut(s)	140, 209
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 92, 113
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	65
HinfI	GANTC	2 cut(s)	34, 258
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	17, 297
HpyCH4V	TGCA	4 cut(s)	50, 61, 161, 293
Hsp92II	CATG	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	6 cut(s)	21, 58, 96, 195, 239, 275
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	8, 295
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	5 cut(s)	94, 109, 164, 183, 211
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	34, 258
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	8, 295
SetI	ASST	4 cut(s)	33, 187, 230, 267
SfcI	CTRYAG	1 cut(s)	13
SmlI	CTYRAG	2 cut(s)	40, 215
SmoI	CTYRAG	2 cut(s)	40, 215
Sse9I	AATT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	2 cut(s)	140, 209
TaaI	ACNGT	2 cut(s)	17, 297
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	34, 258
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.