Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004316.1

Orthogroup ID

OG0024883

Physical Location & Seq

Genomic Coordinates Forward (+)

43991 .. 48744

Gene Structure 4754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004316.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgaggccggatgaacgacctttgtttcataagaggatacaatgggacaagtgcaacctagaggccaccatgaccattctgaggatggggtccgagccactccaagttgacaaggaggcctatctttttatggaaatcgagatgacagatccttttgagaggaacgacctctgtttcatgtttcatgagaggatacgatgtgacaagtgtaaccggaaggccaccatcaccatcatgaggatgaggtctgagctactccaagctgataaaaggaggcttgtcctcttatggaaaccggaaggctacgagagtttattagtcgagatggaatttgaaatagcaaagcaaattttaaggacgcatgatcatgtgtttgcctccagaccccaagctgcagctggcaagtacaccacttacaaccacctcaacatcagttgggcacctcacggcccatattggcgccaaggccgcaaaatctacctctccgagctattcaactcgaagagactagactcctttgagtacattcgtgtggaggaaactcgcgctttcatccaggtacatgcgatcatgaaagagacaatgaggaaacaccctgttgctgtaatgctggcaccacatctggctcttgaagattgcaatgtggaaggaaggaggatgtgccctggttatagccttggattgaaactgattcggtctagcatagctaacatgcttcatggattcaactggaaattgcctgagaatatgaaaccagaagatctgagcatggatgaagtttatggattggcaacaccaaggaagtttccacttgttgcagtcgtggagcctaggctcccaaaccatctttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

284

Amino Acids

33.57

Weight (kDa)

8.81

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024883)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0094951
rosa_multiflora	Rmu_sc0004316.1_g000010
rosa_samantha	Rh2CG434600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	439, 459, 613
AccII	CGCG	1 cut(s)	546
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	329, 348
AcyI	GRCGYC	1 cut(s)	460
AfaI	GTAC	3 cut(s)	407, 524, 561
AfiI	CCNNNNNNNGG	2 cut(s)	81, 237
AgsI	TTSAA	5 cut(s)	335, 496, 632, 685, 727
AjnI	CCWGG	2 cut(s)	555, 664
AluBI	AGCT	6 cut(s)	253, 263, 392, 398, 490, 707
AluI	AGCT	6 cut(s)	253, 263, 392, 398, 490, 707
Alw26I	GTCTC	2 cut(s)	499, 572
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	6 cut(s)	5, 63, 117, 219, 448, 466
ApeKI	GCWGC	2 cut(s)	392, 395
ApoI	RAATTY	2 cut(s)	329, 348
AspA2I	CCTAGG	1 cut(s)	830
AspLEI	GCGC	2 cut(s)	462, 548
AspS9I	GGNCC	2 cut(s)	90, 449
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	90
AvrII	CCTAGG	1 cut(s)	830
BaeGI	GKGCMC	2 cut(s)	442, 665
BanI	GGYRCC	3 cut(s)	439, 459, 613
BbvI	GCAGC	2 cut(s)	379, 407
BccI	CCATC	5 cut(s)	79, 233, 239, 319, 852
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	557, 666
BciVI	GTATCC	2 cut(s)	30, 186
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	499, 572
BfaI	CTAG	4 cut(s)	59, 509, 699, 831
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	463
BfuI	GTATCC	2 cut(s)	30, 186
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	3 cut(s)	393, 396, 469
BlnI	CCTAGG	1 cut(s)	830
BlsI	GCNGC	3 cut(s)	394, 397, 470
Bme1390I	CCNGG	2 cut(s)	557, 666
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	90, 449
BmiI	GGNNCC	6 cut(s)	91, 441, 461, 615, 828, 836
BmrFI	CCNGG	2 cut(s)	557, 666
BpmI	CTGGAG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	460
BsaJI	CCNNGG	5 cut(s)	463, 664, 676, 797, 830
BsaWI	WCCGGW	2 cut(s)	213, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 237
Bse1I	ACTGG	1 cut(s)	734
Bse3DI	GCAATG	1 cut(s)	646
BseBI	CCWGG	2 cut(s)	557, 666
BseDI	CCNNGG	5 cut(s)	463, 664, 676, 797, 830
BseGI	GGATG	6 cut(s)	16, 90, 246, 552, 663, 778
BseLI	CCNNNNNNNGG	2 cut(s)	81, 237
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	4 cut(s)	71, 240, 732, 755
BseNI	ACTGG	1 cut(s)	734
BseSI	GKGCMC	2 cut(s)	442, 665
BseXI	GCAGC	2 cut(s)	379, 407
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	6 cut(s)	7, 65, 119, 221, 450, 468
BshNI	GGYRCC	3 cut(s)	439, 459, 613
BsiSI	CCGG	3 cut(s)	8, 214, 296
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	81, 237
BsmAI	GTCTC	2 cut(s)	499, 572
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	6 cut(s)	7, 65, 119, 221, 450, 468
Bsp1286I	GDGCHC	2 cut(s)	442, 665
Bsp143I	GATC	4 cut(s)	148, 364, 567, 760
BspACI	CCGC	1 cut(s)	469
BspANI	GGCC	6 cut(s)	7, 65, 119, 221, 450, 468
BspCNI	CTCAG	4 cut(s)	72, 241, 733, 756
BspFNI	CGCG	1 cut(s)	546
BspHI	TCATGA	3 cut(s)	184, 234, 570
BspLI	GGNNCC	6 cut(s)	91, 441, 461, 615, 828, 836
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	3 cut(s)	439, 459, 613
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	5 cut(s)	463, 664, 676, 797, 830
BssMI	GATC	4 cut(s)	148, 364, 567, 760
BssNI	GRCGYC	1 cut(s)	460
BssT1I	CCWWGG	4 cut(s)	463, 676, 797, 830
Bst2UI	CCWGG	2 cut(s)	557, 666
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	400, 612
BstDEI	CTNAG	4 cut(s)	80, 249, 741, 764
BstF5I	GGATG	6 cut(s)	16, 90, 246, 552, 663, 778
BstFNI	CGCG	1 cut(s)	546
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	2 cut(s)	462, 548
BstKTI	GATC	4 cut(s)	151, 367, 570, 763
BstMAI	GTCTC	2 cut(s)	499, 572
BstMBI	GATC	4 cut(s)	148, 364, 567, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	2 cut(s)	557, 666
BstNSI	RCATGY	2 cut(s)	566, 715
BstSCI	CCNGG	2 cut(s)	555, 664
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	2 cut(s)	442, 665
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	379, 407
BstX2I	RGATCY	2 cut(s)	148, 760
BstYI	RGATCY	2 cut(s)	148, 760
BsuI	GTATCC	2 cut(s)	30, 186
BsuRI	GGCC	6 cut(s)	7, 65, 119, 221, 450, 468
BtsCI	GGATG	6 cut(s)	16, 90, 246, 552, 663, 778
Cac8I	GCNNGC	2 cut(s)	400, 612
CciI	TCATGA	3 cut(s)	184, 234, 570
CfoI	GCGC	2 cut(s)	462, 548
Cfr13I	GGNCC	2 cut(s)	90, 449
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	406, 523, 560
CviQI	GTAC	3 cut(s)	406, 523, 560
DdeI	CTNAG	4 cut(s)	80, 249, 741, 764
DinI	GGCGCC	1 cut(s)	461
DpnI	GATC	4 cut(s)	150, 366, 569, 762
DpnII	GATC	4 cut(s)	148, 364, 567, 760
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	4 cut(s)	463, 676, 797, 830
Eco147I	AGGCCT	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	555, 664
EcoT14I	CCWWGG	4 cut(s)	463, 676, 797, 830
EgeI	GGCGCC	1 cut(s)	461
EheI	GGCGCC	1 cut(s)	461
ErhI	CCWWGG	4 cut(s)	463, 676, 797, 830
FaqI	GGGAC	1 cut(s)	59
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	393, 396, 469
FokI	GGATG	6 cut(s)	23, 97, 253, 539, 670, 785
Fsp4HI	GCNGC	3 cut(s)	393, 396, 469
FspBI	CTAG	4 cut(s)	59, 509, 699, 831
GlaI	GCGC	2 cut(s)	461, 547
GluI	GCNGC	3 cut(s)	393, 396, 469
GsuI	CTGGAG	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	6 cut(s)	7, 65, 119, 221, 450, 468
HapII	CCGG	3 cut(s)	8, 214, 296
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	2 cut(s)	462, 548
Hin1I	GRCGYC	1 cut(s)	460
Hin6I	GCGC	2 cut(s)	460, 546
HinP1I	GCGC	2 cut(s)	460, 546
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	512, 691, 723
HpaII	CCGG	3 cut(s)	8, 214, 296
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	109, 408
Hpy188I	TCNGA	5 cut(s)	81, 94, 250, 487, 765
Hpy188III	TCNNGA	7 cut(s)	139, 185, 235, 322, 381, 571, 629
Hpy8I	GTNNAC	2 cut(s)	109, 408
HpyAV	CCTTC	4 cut(s)	211, 293, 641, 645
HpyCH4V	TGCA	4 cut(s)	54, 395, 639, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	4 cut(s)	80, 249, 741, 764
Hsp92I	GRCGYC	1 cut(s)	460
HspAI	GCGC	2 cut(s)	460, 546
KasI	GGCGCC	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	148, 364, 567, 760
LmnI	GCTCC	2 cut(s)	826, 840
Lsp1109I	GCAGC	2 cut(s)	379, 407
MaeI	CTAG	4 cut(s)	59, 509, 699, 831
MaeIII	GTNAC	2 cut(s)	200, 209
MalI	GATC	4 cut(s)	150, 366, 569, 762
MboI	GATC	4 cut(s)	148, 364, 567, 760
MboII	GAAGA	3 cut(s)	514, 644, 770
MflI	RGATCY	2 cut(s)	148, 760
MhlI	GDGCHC	2 cut(s)	442, 665
MluCI	AATT	3 cut(s)	329, 348, 734
Mly113I	GGCGCC	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	506
MseI	TTAA	2 cut(s)	353, 853
MslI	CAYNNNNRTG	4 cut(s)	233, 239, 366, 530
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	3 cut(s)	8, 214, 296
MspR9I	CCNGG	2 cut(s)	557, 666
MvaI	CCWGG	2 cut(s)	557, 666
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	468
NarI	GGCGCC	1 cut(s)	460
NdeII	GATC	4 cut(s)	148, 364, 567, 760
NlaIV	GGNNCC	6 cut(s)	91, 441, 461, 615, 828, 836
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	2 cut(s)	566, 715
PagI	TCATGA	3 cut(s)	184, 234, 570
PceI	AGGCCT	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	691, 723
PkrI	GCNGC	3 cut(s)	394, 397, 470
PleI	GAGTC	1 cut(s)	506
PluTI	GGCGCC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	555, 664
PspGI	CCWGG	2 cut(s)	555, 664
PspN4I	GGNNCC	6 cut(s)	91, 441, 461, 615, 828, 836
PspPI	GGNCC	2 cut(s)	90, 449
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	148, 760
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	407, 524, 561
RsaNI	GTAC	3 cut(s)	406, 523, 560
RseI	CAYNNNNRTG	4 cut(s)	233, 239, 366, 530
SaqAI	TTAA	2 cut(s)	353, 853
SatI	GCNGC	3 cut(s)	393, 396, 469
Sau3AI	GATC	4 cut(s)	148, 364, 567, 760
Sau96I	GGNCC	2 cut(s)	90, 449
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	557, 666
SduI	GDGCHC	2 cut(s)	442, 665
SfcI	CTRYAG	1 cut(s)	393
SfoI	GGCGCC	1 cut(s)	461
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	4 cut(s)	233, 239, 366, 530
Sse9I	AATT	3 cut(s)	329, 348, 734
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	469
SspDI	GGCGCC	1 cut(s)	459
SspMI	CTAG	4 cut(s)	59, 509, 699, 831
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	555, 664
StyI	CCWWGG	4 cut(s)	463, 676, 797, 830
TaqI	TCGA	3 cut(s)	138, 321, 500
TaqII	GACCGA	1 cut(s)	684
TasI	AATT	3 cut(s)	329, 348, 734
TatI	WGTACW	2 cut(s)	405, 522
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	691, 723
Tru1I	TTAA	2 cut(s)	353, 853
Tru9I	TTAA	2 cut(s)	353, 853
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	392, 395
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	9 cut(s)	17, 27, 166, 173, 541, 587, 707, 764, 789
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	2 cut(s)	329, 348
XceI	RCATGY	2 cut(s)	566, 715
XcmI	CCANNNNNNNNNTGG	2 cut(s)	82, 395
XmaJI	CCTAGG	1 cut(s)	830
XspI	CTAG	4 cut(s)	59, 509, 699, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.