RchiOBHm_Chr2g0097341

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
9974793 .. 9975172
380 bp
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UTR
Exon/CDS
Intron
PRQ47221

Sequence Viewer

Length: 150 bp
ATGCAGTGGGTGTGCGTTGGCTTGTTTGCGCAGCAGGGATGCTTCGGTGGTAGCAGGCTGGAACGCAGGGCTGCAGGGAGGGGGCAGCAGGGGCTTCTGTGCAAGGTTGCAAGCGCACGGGCGTTCGGGCTGCAGCGAAGGTTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.33

Weight (kDa)

11.61

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022641)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0097341 RchiOBHm_Chr6g0286801
rosa_multiflora Rmu_ssc0000279.1_g000005
rosa_roxburghii Rroxscaffold_7G00181940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
ApeKI GCWGC 5 cut(s) 31, 71, 85, 130, 133
AspLEI GCGC 2 cut(s) 31, 116
BbvI GCAGC 5 cut(s) 43, 58, 97, 117, 145
BfaI CTAG 1 cut(s) 148
BfmI CTRYAG 2 cut(s) 72, 131
BisI GCNGC 5 cut(s) 32, 72, 86, 131, 134
BlsI GCNGC 5 cut(s) 33, 73, 87, 132, 135
BmsI GCATC 1 cut(s) 29
BseGI GGATG 1 cut(s) 44
BseXI GCAGC 5 cut(s) 43, 58, 97, 117, 145
BspMAI CTGCAG 2 cut(s) 76, 135
BstC8I GCNNGC 2 cut(s) 56, 112
BstF5I GGATG 1 cut(s) 44
BstHHI GCGC 2 cut(s) 31, 116
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSFI CTRYAG 2 cut(s) 72, 131
BstV1I GCAGC 5 cut(s) 43, 58, 97, 117, 145
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 56, 112
CfoI GCGC 2 cut(s) 31, 116
CviJI RGCY 6 cut(s) 21, 58, 71, 94, 130, 147
CviKI_1 RGCY 6 cut(s) 21, 58, 71, 94, 130, 147
Fnu4HI GCNGC 5 cut(s) 32, 72, 86, 131, 134
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 5 cut(s) 32, 72, 86, 131, 134
FspBI CTAG 1 cut(s) 148
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 2 cut(s) 30, 115
GluI GCNGC 5 cut(s) 32, 72, 86, 131, 134
HhaI GCGC 2 cut(s) 31, 116
Hin6I GCGC 2 cut(s) 29, 114
HinP1I GCGC 2 cut(s) 29, 114
HpyAV CCTTC 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 4, 74, 102, 110, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HspAI GCGC 2 cut(s) 29, 114
LpnPI CCDG 6 cut(s) 20, 40, 44, 52, 60, 74
Lsp1109I GCAGC 5 cut(s) 43, 58, 97, 117, 145
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 148
MnlI CCTC 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 91
NsbI TGCGCA 1 cut(s) 30
PkrI GCNGC 5 cut(s) 33, 73, 87, 132, 135
PstI CTGCAG 2 cut(s) 76, 135
SatI GCNGC 5 cut(s) 32, 72, 86, 131, 134
SetI ASST 2 cut(s) 108, 143
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 2 cut(s) 72, 131
SspMI CTAG 1 cut(s) 148
TseI GCWGC 5 cut(s) 31, 71, 85, 130, 133
XspI CTAG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.