Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022641

Physical Location & Seq

Genomic Coordinates Forward (+)

50218354 .. 50219301

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGGAAATTGAATATGAGGTAATCTGTTTGCAGGAAGCTCTTGCAGAAACAAAGGCTGAGAACATGAAACTAAGGGAAAGCATATTGAACAAAGAAATTGAATTCCATAGTGTTATACATGAAAATGAGGAGCTCCAGAACAGGGAGGCTGTTTCTCATAAGAAGGTGGAGGAATTGTCAAAGCTAATTGAAGAAACTGTGGCCAAGAAGCAAGCCAAGGAAAATGGTGAGCTAACAGTCAGTGAAAAAGACTATGATTTGCTTCCTAAAGTAGTCGAATTATCTAAAGTGAATAGGCATGGAAGAGAAGAGAAACTTAGAGTGAAGCTTCCATCACCTCAAAGTGAGGAACCGAACAGTGAAAATTTATGGCAAGAGAATAATGTCTCAATTGGCAAGGCCAAACATGTGAGTTATGCTCAAATCGATACTCTAAACGGGGAGTTGAAAGGTGATGAAAGCAGAGAGAAAGAAGATGAGTCAGTAGAAGTTGAATATAAAATGTGGGAAAGCTGCAAGATTGAAAAGAAGGAATTCTCACCGGAGAGGGAACAAGATCGTGTAATCTTGGAGAAAAATACTAAATCAGCAATGGAAGTGGATCTATGTGATCAAAGAAGTAATAATCCTGACACTCAGAATAGTCAATGTCTTGTTAATGGTTCTTCAGATTCTTGGAACCATGTTGATGGTAAAATTCTTTGTGCTGGTTCTGCTGCTTTCATAGCTCCTGTAGGTGGTGTGCTATTTGCACTGGAAGAAGTTACACGTTGGTGGAGGAGTCAACTTATGTGGTGTGTGTTTTTCACTTATGCTATTGTGGCTGTTGTGGTGCATACTGCACTGAGATGGTGCAACAGTGGAAAATGTGGACATTTTGGCTTAGGTGGCTTCATAATATGGGACATATCTGATGGTCAAGACTCAAGAGGACTATTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005856 GO:0005875 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

315

Amino Acids

35.93

Weight (kDa)

5.05

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	239 - 281	1e-07	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0022641)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097341 RchiOBHm_Chr6g0286801
rosa_multiflora	Rmu_ssc0000279.1_g000005
rosa_roxburghii	Rroxscaffold_7G00181940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	4 cut(s)	104, 367, 536, 699
AcuI	CTGAAG	1 cut(s)	654
AfiI	CCNNNNNNNGG	2 cut(s)	145, 740
AflIII	ACRYGT	2 cut(s)	409, 770
AgsI	TTSAA	7 cut(s)	14, 91, 104, 194, 451, 497, 527
AleI	CACNNNNGTG	1 cut(s)	775
AluBI	AGCT	7 cut(s)	41, 136, 187, 235, 331, 516, 731
AluI	AGCT	7 cut(s)	41, 136, 187, 235, 331, 516, 731
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	612
AoxI	GGCC	2 cut(s)	204, 402
ApeKI	GCWGC	2 cut(s)	516, 719
ApoI	RAATTY	4 cut(s)	104, 367, 536, 699
ArsI	GACNNNNNNTTYG	1 cut(s)	927
Asp700I	GAANNNNTTC	1 cut(s)	536
AsuHPI	GGTGA	4 cut(s)	242, 330, 467, 534
BalI	TGGCCA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	503, 706
BccI	CCATC	4 cut(s)	343, 686, 846, 911
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	735
BisI	GCNGC	2 cut(s)	517, 720
BlsI	GCNGC	2 cut(s)	518, 721
BmiI	GGNNCC	2 cut(s)	354, 683
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	913
Bsa29I	ATCGAT	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 740
Bse1I	ACTGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	145, 740
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	51, 653, 839
BseNI	ACTGG	1 cut(s)	762
BseRI	GAGGAG	2 cut(s)	146, 796
BseXI	GCAGC	2 cut(s)	503, 706
BsgI	GTGCAG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	206, 404
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	2 cut(s)	145, 740
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	920
BsnI	GGCC	2 cut(s)	206, 404
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	559, 604, 613
BspANI	GGCC	2 cut(s)	206, 404
BspCNI	CTCAG	3 cut(s)	52, 652, 840
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	354, 683
BspPI	GGATC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	762
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	559, 604, 613
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	202, 241, 362, 863
Bst6I	CTCTTC	2 cut(s)	301, 306
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	6 cut(s)	60, 74, 320, 639, 848, 886
BstKTI	GATC	3 cut(s)	562, 607, 616
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	3 cut(s)	559, 604, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	716, 728, 824, 891
BstNSI	RCATGY	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	2 cut(s)	503, 706
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	206, 404
BsuTUI	ATCGAT	1 cut(s)	429
BtsIMutI	CAGTG	5 cut(s)	250, 367, 755, 845, 868
Cac8I	GCNNGC	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	429
CspCI	CAANNNNNGTGG	4 cut(s)	582, 617, 776, 811
CviAII	CATG	5 cut(s)	67, 122, 302, 410, 686
DdeI	CTNAG	6 cut(s)	60, 74, 320, 639, 848, 886
DpnI	GATC	3 cut(s)	561, 606, 615
DpnII	GATC	3 cut(s)	559, 604, 613
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	301, 306
EarI	CTCTTC	2 cut(s)	301, 306
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	2 cut(s)	104, 536
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	70, 125, 305, 413, 689
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	5 cut(s)	66, 121, 301, 409, 685
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	517, 720
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	517, 720
GluI	GCNGC	2 cut(s)	517, 720
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	206, 404
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	5 cut(s)	70, 125, 305, 413, 689
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	482, 674, 784, 926
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	4 cut(s)	242, 330, 467, 534
Hpy166II	GTNNAC	2 cut(s)	788, 875
Hpy188I	TCNGA	3 cut(s)	642, 673, 916
Hpy188III	TCNNGA	4 cut(s)	139, 632, 923, 930
Hpy8I	GTNNAC	2 cut(s)	788, 875
HpyAV	CCTTC	2 cut(s)	160, 526
HpyCH4III	ACNGT	4 cut(s)	202, 241, 362, 863
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	7 cut(s)	34, 47, 519, 755, 838, 845, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	716, 728, 824, 891
HpyF3I	CTNAG	6 cut(s)	60, 74, 320, 639, 848, 886
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	5 cut(s)	70, 125, 305, 413, 689
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	559, 604, 613
LmnI	GCTCC	3 cut(s)	133, 141, 736
LpnPI	CCDG	8 cut(s)	20, 130, 152, 558, 645, 696, 743, 747
Lsp1109I	GCAGC	2 cut(s)	503, 706
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	3 cut(s)	561, 606, 615
MboI	GATC	3 cut(s)	559, 604, 613
MboII	GAAGA	6 cut(s)	206, 318, 323, 488, 660, 773
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	3 cut(s)	491, 793, 920
MnlI	CCTC	9 cut(s)	13, 124, 142, 166, 343, 351, 543, 774, 926
Mox20I	TGGCCA	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	4 cut(s)	126, 690, 775, 850
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	716, 728, 824, 891
NdeII	GATC	3 cut(s)	559, 604, 613
NlaIII	CATG	5 cut(s)	70, 125, 305, 413, 689
NlaIV	GGNNCC	2 cut(s)	354, 683
NspI	RCATGY	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	775
PciI	ACATGT	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	518, 721
PleI	GAGTC	3 cut(s)	490, 792, 920
PpsI	GAGTC	3 cut(s)	490, 792, 920
PscI	ACATGT	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	354, 683
PsuI	RGATCY	1 cut(s)	604
RseI	CAYNNNNRTG	4 cut(s)	126, 690, 775, 850
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	2 cut(s)	517, 720
Sau3AI	GATC	3 cut(s)	559, 604, 613
SchI	GAGTC	3 cut(s)	491, 793, 920
SduI	GDGCHC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	735
SmiMI	CAYNNNNRTG	4 cut(s)	126, 690, 775, 850
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
SstI	GAGCTC	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	202, 241, 362, 863
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	2 cut(s)	279, 429
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	5 cut(s)	250, 367, 762, 852, 868
TseI	GCWGC	2 cut(s)	516, 719
TspDTI	ATGAA	6 cut(s)	17, 83, 138, 474, 715, 886
TspRI	CASTG	5 cut(s)	250, 367, 762, 852, 868
XapI	RAATTY	4 cut(s)	104, 367, 536, 699
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.