Carbon catabolite repressor protein 4 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0102431 |
| rosa_multiflora | Rmu_sc0001493.1_g000051 Rmu_sc0008342.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 253 |
| AclWI | GGATC | 3 cut(s) | 1028, 1043, 1056 |
| AcsI | RAATTY | 7 cut(s) | 460, 507, 565, 715, 813, 1065, 1249 |
| AcuI | CTGAAG | 1 cut(s) | 1170 |
| AfaI | GTAC | 6 cut(s) | 32, 262, 834, 920, 1191, 1203 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1126 |
| AgsI | TTSAA | 6 cut(s) | 139, 189, 346, 1057, 1115, 1238 |
| AhlI | ACTAGT | 1 cut(s) | 1223 |
| AjnI | CCWGG | 2 cut(s) | 427, 835 |
| AleI | CACNNNNGTG | 1 cut(s) | 947 |
| AluBI | AGCT | 9 cut(s) | 27, 224, 237, 342, 687, 761, 797, 1294, 1310 |
| AluI | AGCT | 9 cut(s) | 27, 224, 237, 342, 687, 761, 797, 1294, 1310 |
| Alw26I | GTCTC | 3 cut(s) | 96, 900, 1087 |
| AlwI | GGATC | 3 cut(s) | 1028, 1043, 1056 |
| AoxI | GGCC | 2 cut(s) | 523, 1117 |
| ApeKI | GCWGC | 2 cut(s) | 155, 1258 |
| ApoI | RAATTY | 7 cut(s) | 460, 507, 565, 715, 813, 1065, 1249 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 654, 686 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 134 |
| AspS9I | GGNCC | 2 cut(s) | 523, 670 |
| AvaII | GGWCC | 1 cut(s) | 670 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 252, 285 |
| BamHI | GGATCC | 1 cut(s) | 1048 |
| BbvI | GCAGC | 2 cut(s) | 142, 1270 |
| BccI | CCATC | 3 cut(s) | 67, 549, 1156 |
| BciT130I | CCWGG | 2 cut(s) | 429, 837 |
| BciVI | GTATCC | 1 cut(s) | 893 |
| BcoDI | GTCTC | 3 cut(s) | 96, 900, 1087 |
| BcuI | ACTAGT | 1 cut(s) | 1223 |
| BfaI | CTAG | 6 cut(s) | 75, 357, 479, 798, 822, 1224 |
| BfmI | CTRYAG | 1 cut(s) | 976 |
| BfuAI | ACCTGC | 1 cut(s) | 253 |
| BfuI | GTATCC | 1 cut(s) | 893 |
| BisI | GCNGC | 2 cut(s) | 156, 1259 |
| BlsI | GCNGC | 2 cut(s) | 157, 1260 |
| Bme1390I | CCNGG | 2 cut(s) | 429, 837 |
| Bme18I | GGWCC | 1 cut(s) | 670 |
| BmgT120I | GGNCC | 2 cut(s) | 523, 670 |
| BmiI | GGNNCC | 1 cut(s) | 1050 |
| BmrFI | CCNGG | 2 cut(s) | 429, 837 |
| BmsI | GCATC | 4 cut(s) | 491, 740, 874, 1226 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 908, 940 |
| BpmI | CTGGAG | 1 cut(s) | 813 |
| BpuEI | CTTGAG | 1 cut(s) | 558 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1032 |
| BsaI | GGTCTC | 1 cut(s) | 1087 |
| BsaJI | CCNNGG | 1 cut(s) | 428 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1126 |
| Bse1I | ACTGG | 2 cut(s) | 280, 796 |
| Bse3DI | GCAATG | 1 cut(s) | 600 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1032 |
| BseBI | CCWGG | 2 cut(s) | 429, 837 |
| BseDI | CCNNGG | 1 cut(s) | 428 |
| BseGI | GGATG | 3 cut(s) | 1030, 1148, 1303 |
| BseJI | GATNNNNATC | 1 cut(s) | 1032 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1126 |
| BseMI | GCAATG | 1 cut(s) | 600 |
| BseMII | CTCAG | 5 cut(s) | 29, 485, 882, 1068, 1302 |
| BseNI | ACTGG | 2 cut(s) | 280, 796 |
| BseRI | GAGGAG | 1 cut(s) | 636 |
| BseXI | GCAGC | 2 cut(s) | 142, 1270 |
| BsgI | GTGCAG | 3 cut(s) | 603, 1262, 1277 |
| BshFI | GGCC | 2 cut(s) | 525, 1119 |
| BslFI | GGGAC | 1 cut(s) | 1152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1126 |
| BsmAI | GTCTC | 3 cut(s) | 96, 900, 1087 |
| BsmFI | GGGAC | 1 cut(s) | 1152 |
| BsmI | GAATGC | 1 cut(s) | 433 |
| BsnI | GGCC | 2 cut(s) | 525, 1119 |
| Bso31I | GGTCTC | 1 cut(s) | 1087 |
| Bsp143I | GATC | 3 cut(s) | 359, 1033, 1048 |
| BspANI | GGCC | 2 cut(s) | 525, 1119 |
| BspCNI | CTCAG | 5 cut(s) | 28, 484, 883, 1069, 1303 |
| BspLI | GGNNCC | 1 cut(s) | 1050 |
| BspMI | ACCTGC | 1 cut(s) | 253 |
| BspPI | GGATC | 3 cut(s) | 1028, 1043, 1056 |
| BspQI | GCTCTTC | 1 cut(s) | 1284 |
| BspTNI | GGTCTC | 1 cut(s) | 1087 |
| BsrDI | GCAATG | 1 cut(s) | 600 |
| BsrI | ACTGG | 2 cut(s) | 280, 796 |
| BssECI | CCNNGG | 1 cut(s) | 428 |
| BssMI | GATC | 3 cut(s) | 359, 1033, 1048 |
| Bst2UI | CCWGG | 2 cut(s) | 429, 837 |
| Bst4CI | ACNGT | 5 cut(s) | 10, 316, 977, 1018, 1201 |
| Bst6I | CTCTTC | 2 cut(s) | 654, 1284 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 599 |
| BstC8I | GCNNGC | 1 cut(s) | 604 |
| BstDEI | CTNAG | 6 cut(s) | 15, 471, 891, 927, 1077, 1311 |
| BstF5I | GGATG | 3 cut(s) | 1030, 1148, 1303 |
| BstKTI | GATC | 3 cut(s) | 362, 1036, 1051 |
| BstMAI | GTCTC | 3 cut(s) | 96, 900, 1087 |
| BstMBI | GATC | 3 cut(s) | 359, 1033, 1048 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 599 |
| BstNI | CCWGG | 2 cut(s) | 429, 837 |
| BstSCI | CCNGG | 2 cut(s) | 427, 835 |
| BstSFI | CTRYAG | 1 cut(s) | 976 |
| BstV1I | GCAGC | 2 cut(s) | 142, 1270 |
| BstX2I | RGATCY | 1 cut(s) | 1048 |
| BstYI | RGATCY | 1 cut(s) | 1048 |
| BsuI | GTATCC | 1 cut(s) | 893 |
| BsuRI | GGCC | 2 cut(s) | 525, 1119 |
| BtsCI | GGATG | 3 cut(s) | 1030, 1148, 1303 |
| BtsIMutI | CAGTG | 2 cut(s) | 207, 1014 |
| BveI | ACCTGC | 1 cut(s) | 253 |
| Cac8I | GCNNGC | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 2 cut(s) | 523, 670 |
| CsiI | ACCWGGT | 1 cut(s) | 835 |
| Csp6I | GTAC | 6 cut(s) | 31, 261, 833, 919, 1190, 1202 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 133, 168 |
| CviAII | CATG | 6 cut(s) | 127, 363, 496, 677, 970, 1212 |
| CviQI | GTAC | 6 cut(s) | 31, 261, 833, 919, 1190, 1202 |
| DdeI | CTNAG | 6 cut(s) | 15, 471, 891, 927, 1077, 1311 |
| DpnI | GATC | 3 cut(s) | 361, 1035, 1050 |
| DpnII | GATC | 3 cut(s) | 359, 1033, 1048 |
| Eam1104I | CTCTTC | 2 cut(s) | 654, 1284 |
| EarI | CTCTTC | 2 cut(s) | 654, 1284 |
| Eco147I | AGGCCT | 1 cut(s) | 1119 |
| Eco31I | GGTCTC | 1 cut(s) | 1087 |
| Eco47I | GGWCC | 1 cut(s) | 670 |
| Eco57I | CTGAAG | 1 cut(s) | 1170 |
| EcoRII | CCWGG | 2 cut(s) | 427, 835 |
| FaeI | CATG | 6 cut(s) | 130, 366, 499, 680, 973, 1215 |
| FaqI | GGGAC | 1 cut(s) | 1152 |
| FatI | CATG | 6 cut(s) | 126, 362, 495, 676, 969, 1211 |
| Fnu4HI | GCNGC | 2 cut(s) | 156, 1259 |
| FokI | GGATG | 3 cut(s) | 1037, 1135, 1310 |
| Fsp4HI | GCNGC | 2 cut(s) | 156, 1259 |
| FspBI | CTAG | 6 cut(s) | 75, 357, 479, 798, 822, 1224 |
| GluI | GCNGC | 2 cut(s) | 156, 1259 |
| GsuI | CTGGAG | 1 cut(s) | 813 |
| HaeIII | GGCC | 2 cut(s) | 525, 1119 |
| Hin1II | CATG | 6 cut(s) | 130, 366, 499, 680, 973, 1215 |
| HincII | GTYRAC | 2 cut(s) | 877, 1231 |
| HindII | GTYRAC | 2 cut(s) | 877, 1231 |
| HindIII | AAGCTT | 2 cut(s) | 25, 340 |
| HinfI | GANTC | 7 cut(s) | 19, 130, 382, 475, 778, 1268, 1321 |
| HpaI | GTTAAC | 1 cut(s) | 877 |
| Hpy166II | GTNNAC | 4 cut(s) | 319, 877, 921, 1231 |
| Hpy188I | TCNGA | 7 cut(s) | 18, 381, 474, 868, 883, 1078, 1092 |
| Hpy188III | TCNNGA | 1 cut(s) | 1328 |
| Hpy8I | GTNNAC | 4 cut(s) | 319, 877, 921, 1231 |
| HpyAV | CCTTC | 4 cut(s) | 195, 661, 1109, 1168 |
| HpyCH4III | ACNGT | 5 cut(s) | 10, 316, 977, 1018, 1201 |
| HpyCH4IV | ACGT | 1 cut(s) | 1158 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 599 |
| HpyF3I | CTNAG | 6 cut(s) | 15, 471, 891, 927, 1077, 1311 |
| HpySE526I | ACGT | 1 cut(s) | 1158 |
| Hsp92II | CATG | 6 cut(s) | 130, 366, 499, 680, 973, 1215 |
| KspAI | GTTAAC | 1 cut(s) | 877 |
| Kzo9I | GATC | 3 cut(s) | 359, 1033, 1048 |
| LguI | GCTCTTC | 1 cut(s) | 1284 |
| LmnI | GCTCC | 3 cut(s) | 310, 649, 794 |
| Lsp1109I | GCAGC | 2 cut(s) | 142, 1270 |
| LweI | GCATC | 4 cut(s) | 491, 740, 874, 1226 |
| MabI | ACCWGGT | 1 cut(s) | 835 |
| MaeI | CTAG | 6 cut(s) | 75, 357, 479, 798, 822, 1224 |
| MaeII | ACGT | 1 cut(s) | 1158 |
| MaeIII | GTNAC | 3 cut(s) | 118, 532, 1012 |
| MalI | GATC | 3 cut(s) | 361, 1035, 1050 |
| MboI | GATC | 3 cut(s) | 359, 1033, 1048 |
| MboII | GAAGA | 2 cut(s) | 641, 1301 |
| MflI | RGATCY | 1 cut(s) | 1048 |
| MluCI | AATT | 9 cut(s) | 167, 460, 507, 565, 715, 751, 813, 1065, 1249 |
| MlyI | GAGTC | 1 cut(s) | 1277 |
| MmeI | TCCRAC | 1 cut(s) | 690 |
| MroXI | GAANNNNTTC | 1 cut(s) | 134 |
| MseI | TTAA | 3 cut(s) | 393, 876, 987 |
| MslI | CAYNNNNRTG | 3 cut(s) | 138, 494, 947 |
| MspR9I | CCNGG | 2 cut(s) | 429, 837 |
| Mva1269I | GAATGC | 1 cut(s) | 433 |
| MvaI | CCWGG | 2 cut(s) | 429, 837 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 599 |
| NdeII | GATC | 3 cut(s) | 359, 1033, 1048 |
| NlaIII | CATG | 6 cut(s) | 130, 366, 499, 680, 973, 1215 |
| NlaIV | GGNNCC | 1 cut(s) | 1050 |
| NmuCI | GTSAC | 3 cut(s) | 118, 532, 1012 |
| OliI | CACNNNNGTG | 1 cut(s) | 947 |
| PceI | AGGCCT | 1 cut(s) | 1119 |
| PciSI | GCTCTTC | 1 cut(s) | 1284 |
| PctI | GAATGC | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 134 |
| PfeI | GAWTC | 6 cut(s) | 19, 130, 382, 475, 778, 1321 |
| PkrI | GCNGC | 2 cut(s) | 157, 1260 |
| PleI | GAGTC | 1 cut(s) | 1276 |
| PpsI | GAGTC | 1 cut(s) | 1276 |
| Psp6I | CCWGG | 2 cut(s) | 427, 835 |
| PspGI | CCWGG | 2 cut(s) | 427, 835 |
| PspN4I | GGNNCC | 1 cut(s) | 1050 |
| PspPI | GGNCC | 2 cut(s) | 523, 670 |
| PsuI | RGATCY | 1 cut(s) | 1048 |
| RsaI | GTAC | 6 cut(s) | 32, 262, 834, 920, 1191, 1203 |
| RsaNI | GTAC | 6 cut(s) | 31, 261, 833, 919, 1190, 1202 |
| RseI | CAYNNNNRTG | 3 cut(s) | 138, 494, 947 |
| SapI | GCTCTTC | 1 cut(s) | 1284 |
| SaqAI | TTAA | 3 cut(s) | 393, 876, 987 |
| SatI | GCNGC | 2 cut(s) | 156, 1259 |
| Sau3AI | GATC | 3 cut(s) | 359, 1033, 1048 |
| Sau96I | GGNCC | 2 cut(s) | 523, 670 |
| SchI | GAGTC | 1 cut(s) | 1277 |
| ScrFI | CCNGG | 2 cut(s) | 429, 837 |
| SexAI | ACCWGGT | 1 cut(s) | 835 |
| SfaNI | GCATC | 4 cut(s) | 491, 740, 874, 1226 |
| SfcI | CTRYAG | 1 cut(s) | 976 |
| SinI | GGWCC | 1 cut(s) | 670 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 138, 494, 947 |
| SmlI | CTYRAG | 1 cut(s) | 573 |
| SmoI | CTYRAG | 1 cut(s) | 573 |
| SpeI | ACTAGT | 1 cut(s) | 1223 |
| Sse9I | AATT | 9 cut(s) | 167, 460, 507, 565, 715, 751, 813, 1065, 1249 |
| SseBI | AGGCCT | 1 cut(s) | 1119 |
| SspI | AATATT | 1 cut(s) | 772 |
| SspMI | CTAG | 6 cut(s) | 75, 357, 479, 798, 822, 1224 |
| StuI | AGGCCT | 1 cut(s) | 1119 |
| StyD4I | CCNGG | 2 cut(s) | 427, 835 |
| TaaI | ACNGT | 5 cut(s) | 10, 316, 977, 1018, 1201 |
| TaiI | ACGT | 1 cut(s) | 1161 |
| TaqII | GACCGA | 1 cut(s) | 520 |
| TasI | AATT | 9 cut(s) | 167, 460, 507, 565, 715, 751, 813, 1065, 1249 |
| TatI | WGTACW | 3 cut(s) | 918, 1189, 1201 |
| TfiI | GAWTC | 6 cut(s) | 19, 130, 382, 475, 778, 1321 |
| Tru1I | TTAA | 3 cut(s) | 393, 876, 987 |
| Tru9I | TTAA | 3 cut(s) | 393, 876, 987 |
| TscAI | CASTG | 2 cut(s) | 214, 1021 |
| TseFI | GTSAC | 3 cut(s) | 118, 532, 1012 |
| TseI | GCWGC | 2 cut(s) | 155, 1258 |
| Tsp45I | GTSAC | 3 cut(s) | 118, 532, 1012 |
| TspDTI | ATGAA | 6 cut(s) | 17, 87, 95, 143, 978, 986 |
| TspRI | CASTG | 2 cut(s) | 214, 1021 |
| VpaK11BI | GGWCC | 1 cut(s) | 670 |
| XapI | RAATTY | 7 cut(s) | 460, 507, 565, 715, 813, 1065, 1249 |
| XmnI | GAANNNNTTC | 1 cut(s) | 134 |
| XspI | CTAG | 6 cut(s) | 75, 357, 479, 798, 822, 1224 |