Rmu_sc0008342.1_g000001

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008342.1
OG0024897
Physical Location & Seq
Reverse (-)
7035 .. 7628
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008342.1_g000001.1.cds

Sequence Viewer

Length: 594 bp
atgacactctggattctgggttcgaagaccactctgaagcagctgagcaacaccctctgccatctgttattctgttgtgctagagaagtagtacctggtgttgcacagcctcttgtttcccattctgaaaaggttaactctgatgcgactgagattggatacagagacagcgtggagtacacctctaagtcaaatgatgacacaaatgtgtgtgtagaaaatgaaagcatgaactgtagtaatcttaaacttttctctacgaagcacaatgtcactgttgaggatgattgtgatccagattatgtggatcctttcaactctaaaattcctttgtctgaggtctctggtcagacttcgtttgttggtgctattgaaggcctcccattggggaacttgggacattttccatccaaagacgtttctgttgttgagaaggataatgcttcagtacaatatacagtacatatatcatgtgcatctactagtgttgactttgaagtgcaggaaaatttggtgcagcaaaaggagtcttttgagaaagagtgggaagagctggatgacaaaagagctgagattgagattcctcctgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

197

Amino Acids

21.84

Weight (kDa)

4.46

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024897)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0102431
rosa_multiflora Rmu_sc0001493.1_g000051 Rmu_sc0008342.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 287, 302, 315
AcsI RAATTY 2 cut(s) 324, 508
AcuI CTGAAG 2 cut(s) 56, 429
AfaI GTAC 4 cut(s) 93, 179, 450, 462
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 3 cut(s) 316, 374, 497
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 206
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 3 cut(s) 43, 553, 569
AluI AGCT 3 cut(s) 43, 553, 569
Alw26I GTCTC 2 cut(s) 159, 346
AlwI GGATC 3 cut(s) 287, 302, 315
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 2 cut(s) 40, 517
ApoI RAATTY 2 cut(s) 324, 508
AsuII TTCGAA 1 cut(s) 23
BamHI GGATCC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 52, 529
BccI CCATC 2 cut(s) 69, 415
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 159, 346
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 2 cut(s) 81, 483
BfmI CTRYAG 1 cut(s) 235
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 2 cut(s) 41, 518
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 2 cut(s) 42, 519
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 133, 485
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu1102I GCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 3 cut(s) 289, 407, 562
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 4 cut(s) 35, 141, 327, 561
BseXI GCAGC 2 cut(s) 52, 529
BsgI GTGCAG 2 cut(s) 521, 536
BshFI GGCC 1 cut(s) 378
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 2 cut(s) 159, 346
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 1 cut(s) 378
Bso31I GGTCTC 1 cut(s) 346
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 292, 307
Bsp1720I GCTNAGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 4 cut(s) 36, 142, 328, 562
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 3 cut(s) 287, 302, 315
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 346
BssMI GATC 2 cut(s) 292, 307
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 236, 277, 460
Bst6I CTCTTC 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 5 cut(s) 44, 150, 186, 336, 570
BstF5I GGATG 3 cut(s) 289, 407, 562
BstKTI GATC 2 cut(s) 295, 310
BstMAI GTCTC 2 cut(s) 159, 346
BstMBI GATC 2 cut(s) 292, 307
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 52, 529
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 289, 407, 562
BtsIMutI CAGTG 1 cut(s) 273
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 4 cut(s) 92, 178, 449, 461
CviAII CATG 2 cut(s) 229, 471
CviJI RGCY 5 cut(s) 43, 109, 378, 553, 569
CviKI_1 RGCY 5 cut(s) 43, 109, 378, 553, 569
CviQI GTAC 4 cut(s) 92, 178, 449, 461
DdeI CTNAG 5 cut(s) 44, 150, 186, 336, 570
DpnI GATC 2 cut(s) 294, 309
DpnII GATC 2 cut(s) 292, 307
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 346
Eco57I CTGAAG 2 cut(s) 56, 429
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 232, 474
FaiI YATR 6 cut(s) 230, 303, 456, 465, 467, 472
FaqI GGGAC 1 cut(s) 411
FatI CATG 2 cut(s) 228, 470
Fnu4HI GCNGC 2 cut(s) 41, 518
FokI GGATG 3 cut(s) 296, 394, 569
Fsp4HI GCNGC 2 cut(s) 41, 518
FspBI CTAG 2 cut(s) 81, 483
GluI GCNGC 2 cut(s) 41, 518
HaeIII GGCC 1 cut(s) 378
Hin1II CATG 2 cut(s) 232, 474
HincII GTYRAC 2 cut(s) 136, 490
HindII GTYRAC 2 cut(s) 136, 490
HinfI GANTC 3 cut(s) 13, 527, 580
HpaI GTTAAC 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 136, 180, 490
Hpy188I TCNGA 5 cut(s) 36, 127, 142, 337, 351
Hpy188III TCNNGA 3 cut(s) 10, 296, 587
Hpy8I GTNNAC 3 cut(s) 136, 180, 490
HpyAV CCTTC 2 cut(s) 368, 427
HpyCH4III ACNGT 3 cut(s) 236, 277, 460
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 4 cut(s) 104, 476, 502, 517
HpyF3I CTNAG 5 cut(s) 44, 150, 186, 336, 570
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 232, 474
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 2 cut(s) 292, 307
LguI GCTCTTC 1 cut(s) 543
LpnPI CCDG 7 cut(s) 2, 81, 108, 309, 330, 488, 539
Lsp1109I GCAGC 2 cut(s) 52, 529
LweI GCATC 2 cut(s) 133, 485
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 2 cut(s) 81, 483
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 294, 309
MboI GATC 2 cut(s) 292, 307
MboII GAAGA 2 cut(s) 37, 560
MflI RGATCY 1 cut(s) 307
MluCI AATT 2 cut(s) 324, 508
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 7 cut(s) 65, 120, 193, 274, 331, 389, 594
MseI TTAA 2 cut(s) 135, 246
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NdeII GATC 2 cut(s) 292, 307
NlaIII CATG 2 cut(s) 232, 474
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 13, 580
PkrI GCNGC 2 cut(s) 42, 519
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 4 cut(s) 93, 179, 450, 462
RsaNI GTAC 4 cut(s) 92, 178, 449, 461
RseI CAYNNNNRTG 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 135, 246
SatI GCNGC 2 cut(s) 41, 518
Sau3AI GATC 2 cut(s) 292, 307
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 96
SetI ASST 8 cut(s) 45, 97, 135, 185, 342, 420, 555, 571
SexAI ACCWGGT 1 cut(s) 94
SfaNI GCATC 2 cut(s) 133, 485
SfcI CTRYAG 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 2 cut(s) 324, 508
SseBI AGGCCT 1 cut(s) 378
SspMI CTAG 2 cut(s) 81, 483
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 236, 277, 460
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 324, 508
TatI WGTACW 3 cut(s) 177, 448, 460
TfiI GAWTC 2 cut(s) 13, 580
Tru1I TTAA 2 cut(s) 135, 246
Tru9I TTAA 2 cut(s) 135, 246
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 40, 517
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 237, 245
TspRI CASTG 1 cut(s) 280
XapI RAATTY 2 cut(s) 324, 508
XspI CTAG 2 cut(s) 81, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.