Rmu_sc0001493.1_g000051

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001493.1
OG0024897
Physical Location & Seq
Reverse (-)
193266 .. 193631
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001493.1_g000051.1.cds

Sequence Viewer

Length: 366 bp
atgaactgtagtaatcttaaactttcctttacgaagcacaatgtcactgttggggatgattgtgatccagattatgtggatcctttcaaatctaaaattcctttgtctgaggtctctggtcagacttcgtttgttggtgcttttgaaggcctcccattggggaacttgggacattttccatccaaagacgtttctgttgttgagaaggataatgcttcagtacaatatacagtacatatatcatgtgcatctactagtcttgaccttgaagtgcaggaaaatttggtgcagcaaaaggagtcttttgagaaagagtgggaagagctggatgacaaaagagctgagattgagattcctccttattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

4.44

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024897)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0102431
rosa_multiflora Rmu_sc0001493.1_g000051 Rmu_sc0008342.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 59, 74, 87
AcsI RAATTY 2 cut(s) 96, 280
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 222, 234
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 3 cut(s) 88, 146, 269
AhlI ACTAGT 1 cut(s) 254
AluBI AGCT 2 cut(s) 325, 341
AluI AGCT 2 cut(s) 325, 341
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 3 cut(s) 59, 74, 87
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 96, 280
BamHI GGATCC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 118
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 81
BmsI GCATC 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 63
BseGI GGATG 3 cut(s) 61, 179, 334
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 99, 333
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 2 cut(s) 293, 308
BshFI GGCC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 64, 79
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 100, 334
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 59, 74, 87
BspQI GCTCTTC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 118
BssMI GATC 2 cut(s) 64, 79
Bst4CI ACNGT 3 cut(s) 8, 49, 232
Bst6I CTCTTC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 108, 342
BstF5I GGATG 3 cut(s) 61, 179, 334
BstKTI GATC 2 cut(s) 67, 82
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 64, 79
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 3 cut(s) 61, 179, 334
BtsIMutI CAGTG 1 cut(s) 45
Csp6I GTAC 2 cut(s) 221, 233
CviAII CATG 1 cut(s) 243
CviJI RGCY 3 cut(s) 150, 325, 341
CviKI_1 RGCY 3 cut(s) 150, 325, 341
CviQI GTAC 2 cut(s) 221, 233
DdeI CTNAG 2 cut(s) 108, 342
DpnI GATC 2 cut(s) 66, 81
DpnII GATC 2 cut(s) 64, 79
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 1 cut(s) 246
FaiI YATR 5 cut(s) 75, 228, 237, 239, 244
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 3 cut(s) 68, 166, 341
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 255
GluI GCNGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 150
Hin1II CATG 1 cut(s) 246
HinfI GANTC 2 cut(s) 299, 352
Hpy188I TCNGA 2 cut(s) 109, 123
Hpy188III TCNNGA 2 cut(s) 68, 260
HpyAV CCTTC 2 cut(s) 140, 199
HpyCH4III ACNGT 3 cut(s) 8, 49, 232
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 248, 274, 289
HpyF3I CTNAG 2 cut(s) 108, 342
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 246
Kzo9I GATC 2 cut(s) 64, 79
LguI GCTCTTC 1 cut(s) 315
LpnPI CCDG 4 cut(s) 81, 102, 260, 311
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 66, 81
MboI GATC 2 cut(s) 64, 79
MboII GAAGA 1 cut(s) 332
MflI RGATCY 1 cut(s) 79
MluCI AATT 2 cut(s) 96, 280
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 3 cut(s) 103, 161, 366
MseI TTAA 1 cut(s) 18
NdeII GATC 2 cut(s) 64, 79
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 43
PceI AGGCCT 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 222, 234
RsaNI GTAC 2 cut(s) 221, 233
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 2 cut(s) 64, 79
SchI GAGTC 1 cut(s) 308
SetI ASST 5 cut(s) 114, 192, 267, 327, 343
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 7
SgeI CNNG 9 cut(s) 80, 129, 178, 255, 267, 272, 278, 287, 338
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 2 cut(s) 96, 280
SseBI AGGCCT 1 cut(s) 150
SspMI CTAG 1 cut(s) 255
StuI AGGCCT 1 cut(s) 150
TaaI ACNGT 3 cut(s) 8, 49, 232
TaiI ACGT 1 cut(s) 192
TasI AATT 2 cut(s) 96, 280
TatI WGTACW 2 cut(s) 220, 232
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 52
XapI RAATTY 2 cut(s) 96, 280
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.