RchiOBHm_Chr2g0106381

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024855
Physical Location & Seq
Reverse (-)
17796839 .. 17798243
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48047

Sequence Viewer

Length: 294 bp
ATGTGGGGCCCACTATCGGTGAAGATCAACAGTGGGAGTGTCCCAGATCTTAAGGACTTGGCACTTCTTGAAGAAATCAATTTCGGGAACAACCACATTGGACCTGCATTTCCCTTGTTGGGAAATAACCTTGTAAGTCTCATACTGAGTAACAATTCAATGAGATTTGAGATTCCCAAAATGATGAGGCTGCCAACCCTTGGTCTGCCACCGTATCATGTTTTTACATTGGAAGAAATCGAGGATGCAACAAACAATTTCGATGATTCAAACCTATTGGGGGAAAGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

97

Amino Acids

10.77

Weight (kDa)

4.6

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024855)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0106381
rosa_laevigata RLG00000017494
rosa_roxburghii Rroxscaffold_2G00137240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 200
AfiI CCNNNNNNNGG 4 cut(s) 16, 119, 200, 280
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 71, 159, 270
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 7
ApaI GGGCCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 190
AspS9I GGNCC 3 cut(s) 7, 8, 101
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 143
BfrI CTTAAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 112
BglII AGATCT 2 cut(s) 46, 287
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 7, 8, 101
BmiI GGNNCC 2 cut(s) 8, 9
BmsI GCATC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 119, 200, 280
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 4 cut(s) 16, 119, 200, 280
BseMII CTCAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 4 cut(s) 16, 119, 200, 280
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 9
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 24, 46, 287
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 8, 9
BspMI ACCTGC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 24, 46, 287
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 32, 213
BstAFI CTTAAG 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 146, 291
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 3 cut(s) 27, 49, 290
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 24, 46, 287
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 46, 287
BstYI RGATCY 2 cut(s) 46, 287
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 7, 8, 101
CviAII CATG 1 cut(s) 218
CviJI RGCY 2 cut(s) 9, 190
CviKI_1 RGCY 2 cut(s) 9, 190
DdeI CTNAG 2 cut(s) 146, 291
DpnI GATC 3 cut(s) 26, 48, 289
DpnII GATC 3 cut(s) 24, 46, 287
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 221
FaiI YATR 2 cut(s) 143, 219
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 1 cut(s) 221
HinfI GANTC 2 cut(s) 172, 266
HphI GGTGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 68, 85
HpyCH4III ACNGT 2 cut(s) 32, 213
HpyCH4V TGCA 2 cut(s) 107, 248
HpyF3I CTNAG 2 cut(s) 146, 291
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 3 cut(s) 24, 46, 287
LpnPI CCDG 2 cut(s) 57, 117
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 26, 48, 289
MboI GATC 3 cut(s) 24, 46, 287
MboII GAAGA 3 cut(s) 34, 83, 245
MflI RGATCY 2 cut(s) 46, 287
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 79, 154, 256
MnlI CCTC 2 cut(s) 180, 235
MseI TTAA 1 cut(s) 51
MspCI CTTAAG 1 cut(s) 50
NdeII GATC 3 cut(s) 24, 46, 287
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 8, 9
PfeI GAWTC 2 cut(s) 172, 266
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 8, 9
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 7, 8, 101
PsuI RGATCY 2 cut(s) 46, 287
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 24, 46, 287
Sau96I GGNCC 3 cut(s) 7, 8, 101
SduI GDGCHC 1 cut(s) 11
SetI ASST 3 cut(s) 106, 132, 276
SfaNI GCATC 1 cut(s) 235
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 79, 154, 256
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 32, 213
TaqI TCGA 2 cut(s) 240, 261
TasI AATT 3 cut(s) 79, 154, 256
TfiI GAWTC 2 cut(s) 172, 266
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 190
TspRI CASTG 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 200
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.