Rroxscaffold_2G00137240

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0024855
Physical Location & Seq
Forward (+)
74974232 .. 74976226
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137240.1

Sequence Viewer

Length: 441 bp
ATGAAAGTAAGGAATTACTCGAGGAATTTGGACCTTAAACACAAGTTGCAGCTGAGAAGAGAAACCAAGCTTTCCTCAATAACCAAAGAGAAGAAAACCACGAGTATTAGCCTGGCCGATAATCTGTTTGGTGGGAGTGTCCCAAATCTTAAGGACTTGGCACTTCTTGAAGAAATCAATTTCGGGAACAACCACATTGGACCTGCATTTCCCTTGTTCAGAAATAGCCTTGTGAGTCTCATACCGAGTAACAATTCAATGAGATCTAAGATTCCCAAAATGATGAGGCTCGCCAACCCTTGGTCGTCACCGTACCGTGTTTTCACATTGGAAGAAATCGAGGATGCAACAAACAATTTCGATGCTTCAAACCTAATGGGGGAAGGATCTCAAGGACAAATGGTGAAGATTCGCTGGGAGTTTGCATGGAAAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.71

Weight (kDa)

9.74

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024855)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0106381
rosa_laevigata RLG00000017494
rosa_roxburghii Rroxscaffold_2G00137240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 300
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 300, 379
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 170, 258, 369
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 52, 70
AluI AGCT 2 cut(s) 52, 70
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 31, 200
AsuHPI GGTGA 2 cut(s) 300, 415
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 2 cut(s) 31, 200
BauI CACGAG 1 cut(s) 100
BbvI GCAGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 242
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 211
BglII AGATCT 1 cut(s) 263
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 31, 200
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 31, 200
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 334, 352
BpuEI CTTGAG 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 379
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 300, 379
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 414
BshFI GGCC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 300, 379
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 19
Bsp143I GATC 2 cut(s) 263, 386
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 263, 386
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 312, 317
Bst6I CTCTTC 1 cut(s) 52
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 53, 267
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 266, 389
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 263, 386
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 263, 386
BstYI RGATCY 2 cut(s) 263, 386
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 31, 200
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 426
CviJI RGCY 6 cut(s) 52, 70, 111, 116, 228, 289
CviKI_1 RGCY 6 cut(s) 52, 70, 111, 116, 228, 289
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 53, 267
DpnI GATC 2 cut(s) 265, 388
DpnII GATC 2 cut(s) 263, 386
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 31, 200
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 1 cut(s) 429
FaiI YATR 2 cut(s) 242, 427
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 425
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 418
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 235, 271, 409
HphI GGTGA 2 cut(s) 300, 415
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 167, 184
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 312, 317
HpyCH4V TGCA 4 cut(s) 49, 206, 347, 425
HpyF3I CTNAG 2 cut(s) 53, 267
Hsp92II CATG 1 cut(s) 429
Kzo9I GATC 2 cut(s) 263, 386
LpnPI CCDG 4 cut(s) 98, 125, 216, 400
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 334, 352
MaeIII GTNAC 2 cut(s) 248, 306
MalI GATC 2 cut(s) 265, 388
MboI GATC 2 cut(s) 263, 386
MboII GAAGA 5 cut(s) 69, 103, 182, 344, 418
MflI RGATCY 2 cut(s) 263, 386
MluCI AATT 5 cut(s) 13, 25, 178, 253, 355
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 4 cut(s) 15, 85, 279, 334
MseI TTAA 2 cut(s) 36, 150
MspA1I CMGCKG 1 cut(s) 52
MspCI CTTAAG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
NdeII GATC 2 cut(s) 263, 386
NlaIII CATG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 19
PfeI GAWTC 2 cut(s) 271, 409
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 2 cut(s) 31, 200
PspXI VCTCGAGB 1 cut(s) 19
PsuI RGATCY 2 cut(s) 263, 386
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 36, 150
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 263, 386
Sau96I GGNCC 2 cut(s) 31, 200
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 113
SetI ASST 5 cut(s) 36, 54, 72, 205, 375
SfaNI GCATC 2 cut(s) 334, 352
Sfr274I CTCGAG 1 cut(s) 19
SinI GGWCC 2 cut(s) 31, 200
SlaI CTCGAG 1 cut(s) 19
SmlI CTYRAG 3 cut(s) 19, 149, 390
SmoI CTYRAG 3 cut(s) 19, 149, 390
Sse9I AATT 5 cut(s) 13, 25, 178, 253, 355
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 312, 317
TaqI TCGA 3 cut(s) 20, 339, 360
TasI AATT 5 cut(s) 13, 25, 178, 253, 355
TfiI GAWTC 2 cut(s) 271, 409
Tru1I TTAA 2 cut(s) 36, 150
Tru9I TTAA 2 cut(s) 36, 150
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 300
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 31, 200
XapI RAATTY 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.