RLG00000017494

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0024855
Physical Location & Seq
Reverse (-)
17515361 .. 17515973
613 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017494

Sequence Viewer

Length: 492 bp
ATGGTGGCGAATGACGAGAGGACAAGGGCCGCGATGACTGACGACAAAACAAGGGCCGCGATGACTGACGACGTCCTCGTCATCGAGCTACTACTGCAGCTGAAGGAGTGGCGAGCGGCATCATCGGCGTCGTCATCTTCACTTCTCCAGTATCTCTTCACCACCATCAGGAAGCTCTCCAACCTTAAAGTCCTATCCCTTGTGTCTTTAGGCCTTGGGAGTGTCCTAGATCTTAAGGACTTGGCACTTCTTGAAGAAATCAATTTCGGTAACAACCACATTGGACCTGCATTTCCCTCGTTGGGAAATAGCCTTGTAAGTCTCATACTGAGTAACAATTCAATGAGATCTAAGATTCCCAAAATGATGGCTGCCAACCCTTGGTCTGCCACTGTATCGTGTTTTCACATTGGAAGAAATCGAGGATGCAACAAACAATTTCGATGCTTCAAACCTAATGGGGGAAGGATCTCAAGGACAAGTATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

164

Amino Acids

17.89

Weight (kDa)

9.72

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024855)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0106381
rosa_laevigata RLG00000017494
rosa_roxburghii Rroxscaffold_2G00137240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AatII GACGTC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 381
AccBSI CCGCTC 1 cut(s) 116
AccII CGCG 2 cut(s) 32, 59
AciI CCGC 3 cut(s) 30, 57, 116
AclWI GGATC 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 2 cut(s) 72, 128
AfiI CCNNNNNNNGG 4 cut(s) 168, 302, 381, 461
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 3 cut(s) 254, 342, 451
AluBI AGCT 3 cut(s) 88, 100, 175
AluI AGCT 3 cut(s) 88, 100, 175
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 476
AoxI GGCC 3 cut(s) 27, 54, 211
ApeKI GCWGC 2 cut(s) 97, 371
AspS9I GGNCC 3 cut(s) 27, 54, 284
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 109, 358
BccI CCATC 2 cut(s) 173, 361
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 295
BglII AGATCT 2 cut(s) 229, 347
BisI GCNGC 5 cut(s) 30, 57, 98, 117, 372
BlsI GCNGC 5 cut(s) 31, 58, 99, 118, 373
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 27, 54, 284
BmsI GCATC 3 cut(s) 128, 416, 434
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 457
BsaHI GRCGYC 2 cut(s) 72, 128
BsaJI CCNNGG 2 cut(s) 214, 380
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 302, 381, 461
Bse1I ACTGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 214, 380
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 4 cut(s) 168, 302, 381, 461
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 148
BseXI GCAGC 2 cut(s) 109, 358
Bsh1236I CGCG 2 cut(s) 32, 59
BshFI GGCC 3 cut(s) 29, 56, 213
BslI CCNNNNNNNGG 4 cut(s) 168, 302, 381, 461
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 3 cut(s) 29, 56, 213
Bsp143I GATC 3 cut(s) 229, 347, 468
BspACI CCGC 3 cut(s) 30, 57, 116
BspANI GGCC 3 cut(s) 29, 56, 213
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 2 cut(s) 32, 59
BspMAI CTGCAG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 1 cut(s) 476
BspTI CTTAAG 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 214, 380
BssMI GATC 3 cut(s) 229, 347, 468
BssNI GRCGYC 2 cut(s) 72, 128
BssT1I CCWWGG 2 cut(s) 214, 380
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 2 cut(s) 72, 128
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 329, 351
BstF5I GGATG 1 cut(s) 431
BstFNI CGCG 2 cut(s) 32, 59
BstKTI GATC 3 cut(s) 232, 350, 471
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 3 cut(s) 229, 347, 468
BstMWI GCNNNNNNNGC 2 cut(s) 94, 125
BstSFI CTRYAG 1 cut(s) 95
BstUI CGCG 2 cut(s) 32, 59
BstV1I GCAGC 2 cut(s) 109, 358
BstX2I RGATCY 3 cut(s) 229, 347, 468
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 3 cut(s) 229, 347, 468
BsuRI GGCC 3 cut(s) 29, 56, 213
BtgZI GCGATG 2 cut(s) 47, 74
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 390
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 27, 54, 284
CseI GACGC 1 cut(s) 117
CviJI RGCY 8 cut(s) 29, 56, 88, 100, 175, 213, 312, 371
CviKI_1 RGCY 8 cut(s) 29, 56, 88, 100, 175, 213, 312, 371
DdeI CTNAG 2 cut(s) 329, 351
DpnI GATC 3 cut(s) 231, 349, 470
DpnII GATC 3 cut(s) 229, 347, 468
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 214, 380
Eco147I AGGCCT 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 214, 380
ErhI CCWWGG 2 cut(s) 214, 380
FaiI YATR 1 cut(s) 326
Fnu4HI GCNGC 5 cut(s) 30, 57, 98, 117, 372
FokI GGATG 1 cut(s) 438
Fsp4HI GCNGC 5 cut(s) 30, 57, 98, 117, 372
FspBI CTAG 1 cut(s) 227
GluI GCNGC 5 cut(s) 30, 57, 98, 117, 372
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 3 cut(s) 29, 56, 213
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 2 cut(s) 72, 128
HinfI GANTC 1 cut(s) 355
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 169, 251
Hpy99I CGWCG 2 cut(s) 74, 133
HpyAV CCTTC 2 cut(s) 97, 459
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 97, 290, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 125
HpyF3I CTNAG 2 cut(s) 329, 351
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 72, 128
Kzo9I GATC 3 cut(s) 229, 347, 468
LpnPI CCDG 3 cut(s) 154, 161, 300
Lsp1109I GCAGC 2 cut(s) 109, 358
LweI GCATC 3 cut(s) 128, 416, 434
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 269, 332
MalI GATC 3 cut(s) 231, 349, 470
MbiI CCGCTC 1 cut(s) 116
MboI GATC 3 cut(s) 229, 347, 468
MboII GAAGA 4 cut(s) 129, 148, 266, 426
MflI RGATCY 3 cut(s) 229, 347, 468
MluCI AATT 3 cut(s) 262, 337, 437
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 12, 86, 307, 416
MseI TTAA 2 cut(s) 186, 234
MspA1I CMGCKG 1 cut(s) 100
MspCI CTTAAG 1 cut(s) 233
MvnI CGCG 2 cut(s) 32, 59
MwoI GCNNNNNNNGC 2 cut(s) 94, 125
NdeII GATC 3 cut(s) 229, 347, 468
PceI AGGCCT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 5 cut(s) 31, 58, 99, 118, 373
PspPI GGNCC 3 cut(s) 27, 54, 284
PstI CTGCAG 1 cut(s) 99
PsuI RGATCY 3 cut(s) 229, 347, 468
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 186, 234
SatI GCNGC 5 cut(s) 30, 57, 98, 117, 372
Sau3AI GATC 3 cut(s) 229, 347, 468
Sau96I GGNCC 3 cut(s) 27, 54, 284
SetI ASST 7 cut(s) 75, 90, 102, 177, 186, 289, 457
SfaNI GCATC 3 cut(s) 128, 416, 434
SfcI CTRYAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 233, 472
SmoI CTYRAG 2 cut(s) 233, 472
Sse9I AATT 3 cut(s) 262, 337, 437
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 3 cut(s) 30, 57, 116
SspMI CTAG 1 cut(s) 227
StuI AGGCCT 1 cut(s) 213
StyI CCWWGG 2 cut(s) 214, 380
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 84, 421, 442
TasI AATT 3 cut(s) 262, 337, 437
TauI GCSGC 3 cut(s) 32, 59, 119
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 186, 234
Tru9I TTAA 2 cut(s) 186, 234
TscAI CASTG 1 cut(s) 397
TseI GCWGC 2 cut(s) 97, 371
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 381
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 284
XspI CTAG 1 cut(s) 227
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.