RchiOBHm_Chr2g0108301

phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
19731880 .. 19732128
249 bp
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UTR
Exon/CDS
Intron
PRQ48223

Sequence Viewer

Length: 249 bp
ATGTTGGTTGGGATACCAACAATACTTATTTTGAAGTTCTGTAGTAAAGCTCTTGCTAAATGCATTCTTCCTGTGGTAAGCTACACCTTAGGCATCCCAATAAAATCAAGTAATGGGGAAAAATCAGATGGGTTGAAGCACTCAGGTTATCTCCAGAAGCTGTACCTTTTCTCCAGCCAGGACTCATTTGATGTCGATGCTAGCATAAGATTCATTCAATATATATTCTGGCCTTGCATGGTCGGGTAG

Protein Analysis

82

Amino Acids

9.11

Weight (kDa)

8.86

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024815)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0108301
rosa_multiflora Rmu_co8334817.1_g000001
rosa_samantha Rh2BG213600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 3 cut(s) 34, 136, 218
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 50, 81, 160
AluI AGCT 3 cut(s) 50, 81, 160
AlwNI CAGNNNCTG 1 cut(s) 160
AoxI GGCC 1 cut(s) 230
AsuNHI GCTAGC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 88
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 6
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 40
BfuI GTATCC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 102, 187
BmtI GCTAGC 1 cut(s) 204
BpmI CTGGAG 2 cut(s) 137, 157
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse21I CCTNAGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 1 cut(s) 232
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 155
BspOI GCTAGC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 88, 142
BstF5I GGATG 1 cut(s) 93
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 88
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 160
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 238
CviJI RGCY 5 cut(s) 50, 81, 160, 177, 232
CviKI_1 RGCY 5 cut(s) 50, 81, 160, 177, 232
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 88, 142
Eco81I CCTNAGG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 65
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 206, 222, 224, 239
FatI CATG 1 cut(s) 237
FokI GGATG 1 cut(s) 80
FspBI CTAG 1 cut(s) 201
GsuI CTGGAG 2 cut(s) 137, 157
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 1 cut(s) 241
HinfI GANTC 2 cut(s) 182, 210
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 63, 237
HpyF3I CTNAG 2 cut(s) 88, 142
Hsp92II CATG 1 cut(s) 241
LpnPI CCDG 7 cut(s) 84, 129, 164, 167, 187, 191, 214
LweI GCATC 2 cut(s) 102, 187
MaeI CTAG 1 cut(s) 201
MboII GAAGA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 179
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 65
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 210
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 179
SetI ASST 6 cut(s) 52, 83, 89, 148, 162, 168
SfaNI GCATC 2 cut(s) 102, 187
SfcI CTRYAG 1 cut(s) 40
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 195
TfiI GAWTC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 202
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.