Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334817.1

Orthogroup ID

OG0024815

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 815

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 311 bp

atgctggttgggataccaacaatacttattgtgaagttctgtagtaaagctcttgctaaatggattcttcctgtggtagccaataccttgggcatcccaataaaatcaactacatacattcctatgctaaatggattaagcaacgcgaaaaaatcagatgggtcgaagcagtcaggttatctccagaagctgtaccttttctccagccaaggctcatttgatgtcgatactggtataagattcattcaatatgctggccttgcatggtcagtggtagatcttgttccttcgcttttctctcagctaagcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

9.56

Isoelectric Point (pI)

23.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024815)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108301
rosa_multiflora	Rmu_co8334817.1_g000001
rosa_samantha	Rh2BG213600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	3 cut(s)	50, 190, 304
AluI	AGCT	3 cut(s)	50, 190, 304
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	256
BccI	CCATC	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	6
BglII	AGATCT	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	305
BmsI	GCATC	1 cut(s)	102
BpmI	CTGGAG	2 cut(s)	167, 187
Bpu1102I	GCTNAGC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	87, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	87, 208
BseGI	GGATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	277
Bsp1720I	GCTNAGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	87, 208
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	87, 208
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	300, 305
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	8 cut(s)	50, 80, 190, 207, 213, 258, 304, 309
CviKI_1	RGCY	8 cut(s)	50, 80, 190, 207, 213, 258, 304, 309
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	300, 305
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	87, 208
EcoT14I	CCWWGG	2 cut(s)	87, 208
ErhI	CCWWGG	2 cut(s)	87, 208
FaeI	CATG	1 cut(s)	267
FaiI	YATR	5 cut(s)	115, 125, 236, 252, 265
FatI	CATG	1 cut(s)	263
FokI	GGATG	1 cut(s)	80
GsuI	CTGGAG	2 cut(s)	167, 187
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	267
HinfI	GANTC	2 cut(s)	64, 240
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	300, 305
Hsp92II	CATG	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	84, 159, 197, 216, 217, 240
LweI	GCATC	1 cut(s)	102
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	277
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	64, 240
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	277
SetI	ASST	6 cut(s)	52, 89, 178, 192, 198, 306
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	122
StyI	CCWWGG	2 cut(s)	87, 208
TaqI	TCGA	2 cut(s)	164, 225
TfiI	GAWTC	2 cut(s)	64, 240
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.