RchiOBHm_Chr2g0112321

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
24274472 .. 24275674
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48581

Sequence Viewer

Length: 375 bp
ATGCAGTTTGATGATAAGAACCTAGTGGAAAAGGCAAAAAGGCGTGCTGTGGTCAATCAAACAGAAGCTAAAAACAGAGTTGAATTGTTCCGGCATCTGCCTCAATATGAACGGGAACTCAGCTTCCAGATCTCGAGTCAAAGTTTTTTCAACTTGATCTTCAAGGTCAATGTGAATGTTGAGGACTTTATCTCGGATGAGCTAATAGAATATATCCATGATAGGTGTGACAAAAGGAATGAAAATTCAATTCCATGTTCAATAGATAAGATCACAAAGGGGAAGGCAGGTTTGGACTTTGGAGTACATTCCTTAACTAGCAATGTTTTTCAAATTGGAGACCAAGTTAAGGAGATTAAAGGTGCAGTCAACTAA

Protein Analysis

124

Amino Acids

14.34

Weight (kDa)

6.3

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020494)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0112321 RchiOBHm_Chr2g0128271
rosa_multiflora Rmu_co8128860.1_g000001
rosa_roxburghii Rroxscaffold_4G00322720
rosa_samantha Rh2BG340100 Rh2CG237100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 6 cut(s) 83, 151, 163, 249, 261, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 3 cut(s) 68, 123, 202
AluI AGCT 3 cut(s) 68, 123, 202
Alw26I GTCTC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 133
ApoI RAATTY 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 2 cut(s) 23, 318
BfuAI ACCTGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 133
BmsI GCATC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 328
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 133
Bsp143I GATC 3 cut(s) 129, 156, 270
BspCNI CTCAG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 328
BssMI GATC 3 cut(s) 129, 156, 270
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 3 cut(s) 132, 159, 273
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 129, 156, 270
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BtsCI GGATG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 218, 255
CviJI RGCY 3 cut(s) 68, 123, 202
CviKI_1 RGCY 3 cut(s) 68, 123, 202
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 119
DpnI GATC 3 cut(s) 131, 158, 272
DpnII GATC 3 cut(s) 129, 156, 270
Eco31I GGTCTC 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 133
FaeI CATG 2 cut(s) 221, 258
FaiI YATR 4 cut(s) 108, 213, 219, 256
FatI CATG 2 cut(s) 217, 254
FokI GGATG 1 cut(s) 209
FspBI CTAG 2 cut(s) 23, 318
HapII CCGG 1 cut(s) 91
Hin1II CATG 2 cut(s) 221, 258
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 127, 133
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 4, 365
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 2 cut(s) 221, 258
Kzo9I GATC 3 cut(s) 129, 156, 270
LpnPI CCDG 3 cut(s) 104, 140, 273
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 23, 318
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 131, 158, 272
MboI GATC 3 cut(s) 129, 156, 270
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 129
MluCI AATT 4 cut(s) 83, 244, 249, 333
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 2 cut(s) 111, 175
MseI TTAA 3 cut(s) 314, 348, 357
MspI CCGG 1 cut(s) 91
NdeII GATC 3 cut(s) 129, 156, 270
NlaIII CATG 2 cut(s) 221, 258
NmuCI GTSAC 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 133
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 3 cut(s) 314, 348, 357
Sau3AI GATC 3 cut(s) 129, 156, 270
SchI GAGTC 1 cut(s) 145
SetI ASST 8 cut(s) 24, 70, 125, 168, 204, 227, 292, 364
SfaNI GCATC 1 cut(s) 103
Sfr274I CTCGAG 1 cut(s) 133
SlaI CTCGAG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 4 cut(s) 83, 244, 249, 333
SspMI CTAG 2 cut(s) 23, 318
TaqI TCGA 1 cut(s) 134
TasI AATT 4 cut(s) 83, 244, 249, 333
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 3 cut(s) 314, 348, 357
Tru9I TTAA 3 cut(s) 314, 348, 357
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 123, 255
XapI RAATTY 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 133
XspI CTAG 2 cut(s) 23, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.