Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0020494

Physical Location & Seq

Genomic Coordinates Reverse (-)

24520375 .. 24521291

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGTTCCTACAAGCTCAGAATAGTCGAAAGCTAAGCCGATCGACTAAGGCCGAAAGGCGTGCTCTGCAGGAGGCTCAACGTGTTGCGAAAGTCGCCACTAAAGTGGTTGCTTCTGACAAGAAGGGTGGTGATCGACCAACAGATGATGTTCCTCCTCCACGTATGCAGTTTGATGATAAGAACCTAGTGGAAAAGGCAAAAAGGCGTGCTGTGGTCAATCAAACAGAAGCTAAAAACAGAGTTGAATTGTTCCGGCATCTGCCTCAATATGAACGGGAACTCAGCTTCCAGATCTCGAGTCAAAGTTTTTTCAACTTGATCTTCAAGGTCAATGTGAATGTTGAGGACTTTATCTCGGATGAGCTAATAGAATATATCCATGATAGGTATGTAATTTGCTGCTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

137

Amino Acids

16.01

Weight (kDa)

9.45

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020494)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112321 RchiOBHm_Chr2g0128271
rosa_multiflora	Rmu_co8128860.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322720
rosa_samantha	Rh2BG340100 Rh2CG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	248, 316, 328
AleI	CACNNNNGTG	1 cut(s)	104
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	5 cut(s)	17, 34, 233, 288, 367
AluI	AGCT	5 cut(s)	17, 34, 233, 288, 367
Alw21I	GWGCWC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	68
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	403
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	268
Bpu1102I	GCTNAGC	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	164
BseGI	GGATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	32, 298
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	256
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	41, 133, 294, 321
Bsp1720I	GCTNAGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	31, 297
BspMAI	CTGCAG	1 cut(s)	72
BssMI	GATC	4 cut(s)	41, 133, 294, 321
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	63, 210
BstDEI	CTNAG	4 cut(s)	18, 35, 48, 284
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	4 cut(s)	44, 136, 297, 324
BstMBI	GATC	4 cut(s)	41, 133, 294, 321
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 95
BstSFI	CTRYAG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	63, 210
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	8 cut(s)	17, 34, 39, 53, 77, 233, 288, 367
CviKI_1	RGCY	8 cut(s)	17, 34, 39, 53, 77, 233, 288, 367
DdeI	CTNAG	4 cut(s)	18, 35, 48, 284
DpnI	GATC	4 cut(s)	43, 135, 296, 323
DpnII	GATC	4 cut(s)	41, 133, 294, 321
Eco88I	CYCGRG	1 cut(s)	298
FaeI	CATG	1 cut(s)	386
FaiI	YATR	5 cut(s)	167, 273, 378, 384, 393
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	403
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	403
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	403
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	1 cut(s)	386
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	21, 118, 361
Hpy188III	TCNNGA	2 cut(s)	292, 298
HpyAV	CCTTC	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	82, 163
HpyCH4V	TGCA	2 cut(s)	70, 169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 95
HpyF3I	CTNAG	4 cut(s)	18, 35, 48, 284
HpySE526I	ACGT	2 cut(s)	82, 163
Hsp92II	CATG	1 cut(s)	386
Kzo9I	GATC	4 cut(s)	41, 133, 294, 321
LpnPI	CCDG	3 cut(s)	56, 269, 305
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	2 cut(s)	82, 163
MalI	GATC	4 cut(s)	43, 135, 296, 323
MboI	GATC	4 cut(s)	41, 133, 294, 321
MboII	GAAGA	1 cut(s)	316
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	2 cut(s)	248, 396
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	5 cut(s)	67, 165, 168, 276, 340
MseI	TTAA	1 cut(s)	412
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	67, 95
NdeII	GATC	4 cut(s)	41, 133, 294, 321
NlaIII	CATG	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	404
Ple19I	CGATCG	1 cut(s)	44
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	294
PvuI	CGATCG	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	4 cut(s)	41, 133, 294, 321
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	68
Sfr274I	CTCGAG	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	2 cut(s)	248, 396
SspMI	CTAG	1 cut(s)	188
TaiI	ACGT	2 cut(s)	85, 166
TaqI	TCGA	4 cut(s)	28, 44, 136, 299
TasI	AATT	2 cut(s)	248, 396
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TseI	GCWGC	1 cut(s)	402
TspDTI	ATGAA	2 cut(s)	17, 288
XhoI	CTCGAG	1 cut(s)	298
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.