Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8128860.1

Orthogroup ID

OG0020494

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 228

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8128860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

acagataggaggaaagatgttcctcctccacgtatgcagtttgatgataagagccgagtggaaaaggcaaaaaggcgtgctgtggtcaatcaaacagaagctaaaaacagagttgaattgttccggcatttgcctcaatatgaacggggaactcagcttccagatctcgagtcaaagttttttcaacttgatcccatgcatcctgccatttataaggtactcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

75

Amino Acids

8.96

Weight (kDa)

9.89

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020494)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112321 RchiOBHm_Chr2g0128271
rosa_multiflora	Rmu_co8128860.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322720
rosa_samantha	Rh2BG340100 Rh2CG237100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AclWI	GGATC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	116, 185
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	2 cut(s)	101, 157
AluI	AGCT	2 cut(s)	101, 157
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	32
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	163, 190
BspCNI	CTCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	185
BssMI	GATC	2 cut(s)	163, 190
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	166, 193
BstMBI	GATC	2 cut(s)	163, 190
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	3 cut(s)	54, 101, 157
CviKI_1	RGCY	3 cut(s)	54, 101, 157
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	165, 192
DpnII	GATC	2 cut(s)	163, 190
Eco88I	CYCGRG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	201
FaeI	CATG	1 cut(s)	199
FaiI	YATR	4 cut(s)	35, 141, 197, 213
FatI	CATG	1 cut(s)	195
FokI	GGATG	1 cut(s)	186
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	161, 167
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	37, 199
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	163, 190
LpnPI	CCDG	3 cut(s)	137, 174, 216
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	31
MalI	GATC	2 cut(s)	165, 192
MboI	GATC	2 cut(s)	163, 190
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	3, 33, 36, 144
Mph1103I	ATGCAT	1 cut(s)	201
MseI	TTAA	1 cut(s)	226
MspI	CCGG	1 cut(s)	124
NdeII	GATC	2 cut(s)	163, 190
NlaIII	CATG	1 cut(s)	199
NmeAIII	GCCGAG	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	167
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	163, 190
SchI	GAGTC	1 cut(s)	179
SetI	ASST	4 cut(s)	34, 103, 159, 219
SfaNI	GCATC	1 cut(s)	208
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.