Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022657

Physical Location & Seq

Genomic Coordinates Reverse (-)

26481302 .. 26484702

Gene Structure 3401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGATAGTGGGACTAAGGAGCAGTCGCATAAGGGTCATAGGGCCAGGCAGTCGGGTCCTAAGGCTAATAAGAAGCCTGAAACCTCAAGAATCGACCGGTGGCAAAACCACAGGGCATTTGCTTTTAACTCCACCGTCAAAGCCAAGCGTCTGCAATACCGTGCCGTTGAGAAAGAGCAGAACAGGCCTATGGCGAAGAACCAGCTCCATACGTTGTTGTGGTGCATGGACCTCCAAAGGAAACATTTGAATTCCTTAATATATTGCAAGTTCATGGCTTCCCAAAGGTTATGGGAGTTCTTACTCACCTTGATAAATTTCAAAGAAGCAAATAAATTAAAGAAAACAAAGCAGCATCTGAAGCACCGTTTCTGGACTGAAATATATGATGGTGCTAAACTGTTTTATTTATCTGGCCTGGATCATGGGAAGTTTGTCAAAAGAGAAATTCACAATCTGGCACGTTTCATATCTGTTATGAAGTTTCATCCTTTATCTTGGCAAACTGCTCATCCTTATGTTTTGGTAGATCGTTTTGAAGATGTCACTCCTCCTGAAAATGTCCATATGAATAACAAATGTGATAGAAATGTCACGCACTATGGTTATCTGCGGGGTGTTGGTGATTATAATGTTTCTGGTATGACAGCCATGACTGATCCTTGTCCTTTACCCTCAGCTGCCAGAAAGAAGGGACTGAGTAACAAGGAAAAACTGTTTTATGCACCCATGTCTGGAATTGGGAATCTTCTGTATGACAAAGATGCGGTCTATATTAACATAAATGACCACTTTGTCCAGTACTCACATGTTGATGATAAGGCGGAAGCAACAGACATGCTTTCATTTGATGACTACTTTTGTTCTTGTGTAGCAGGAAAGTGCAAAGATTTGGGTGTGAATTTGGTAAAATCCCTTCAGAGCACAAAATATTCGGTTGATGAAAAGCTAGAGCAGGGTTCCATTAATCTTTTTAACCGGAAGCCTAACTTATCGTTGGAAACTCAACGTGGTGGGAAGGATACTAGTGAATCTAGAGAACAGATTTGCATGATAGAGAACTCAGAGGATTATCAGTCTGGAGAAGCTACCAAAGCTGATGCTGCTGACATATATGTGCTGACCGATAGTGAATATAGTGGATCTGATAGAGAAAATTGTGATGCATCATATCATGATGCTACTCATAAAGATCAGTTGATGAAATATGTTGACTTTCATAATGGAAGATCAAGGAGAAAAGTCATCTTTGGAAATGGCTTTGATGATAATGATATGAAGGACTCAAATGATGAGGCTGAAGTTGAGGATGGGGATGAAGACGACAACGACAATGATGATGTAGATAATTGTGAATATAGTGGTTCAGAGTCTTCAGGTGAAGATGAGCAGGTTCATGGAACAGATGATGACATGGGAAACATTGCAAAGTGGAAAGAGTCTTTGGCAGAAAGGACTTTCTTGAAACAAACCACTAACCTTATCCAACATTCCAACTTGTATATGGGAAATCTACATCAATGTCAACTTCTGTCAATGAAGAAAATGATAGTAGCGCCGATGAGGAAAGTGATGGAGAAGACTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

529

Amino Acids

60.85

Weight (kDa)

6.33

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	161 - 208	5.7e-14	AARP2CN (NUC121) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022657)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114591
rosa_samantha	Rh2AG248800 Rh2CG252400 Rh2DG256900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AasI	GACNNNNNNGTC	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	1381
AciI	CCGC	3 cut(s)	613, 767, 824
AclWI	GGATC	3 cut(s)	429, 653, 1150
AcsI	RAATTY	4 cut(s)	250, 316, 447, 901
AcuI	CTGAAG	4 cut(s)	380, 902, 1320, 1359
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	808
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	250, 322, 539, 1465
AhlI	ACTAGT	1 cut(s)	1025
AjnI	CCWGG	2 cut(s)	44, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	1427, 1459
AluBI	AGCT	5 cut(s)	205, 680, 949, 1088, 1097
AluI	AGCT	5 cut(s)	205, 680, 949, 1088, 1097
Alw21I	GWGCWC	1 cut(s)	926
AlwI	GGATC	3 cut(s)	429, 653, 1150
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	3 cut(s)	42, 185, 415
ApeKI	GCWGC	3 cut(s)	352, 680, 1103
ApoI	RAATTY	4 cut(s)	250, 316, 447, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AseI	ATTAAT	1 cut(s)	966
AsiGI	ACCGGT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	1583
AspLEI	GCGC	1 cut(s)	1558
AspS9I	GGNCC	3 cut(s)	42, 56, 229
AsuHPI	GGTGA	3 cut(s)	298, 635, 1391
AvaII	GGWCC	2 cut(s)	56, 229
AxyI	CCTNAGG	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	900, 932
BbsI	GAAGAC	3 cut(s)	1326, 1365, 1586
Bbv12I	GWGCWC	1 cut(s)	926
BbvCI	CCTCAGC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	364, 667, 1090
BccI	CCATC	3 cut(s)	383, 1304, 1567
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	46, 419
BciVI	GTATCC	1 cut(s)	1015
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	3 cut(s)	950, 1026, 1035
BfoI	RGCGCY	1 cut(s)	1559
BfuAI	ACCTGC	1 cut(s)	1381
BfuI	GTATCC	1 cut(s)	1015
BisI	GCNGC	3 cut(s)	353, 681, 1104
BlsI	GCNGC	3 cut(s)	354, 682, 1105
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	2 cut(s)	46, 419
Bme18I	GGWCC	2 cut(s)	56, 229
BmgT120I	GGNCC	3 cut(s)	42, 56, 229
BmiI	GGNNCC	2 cut(s)	57, 961
BmrFI	CCNGG	2 cut(s)	46, 419
BmsI	GCATC	6 cut(s)	364, 754, 1090, 1153, 1168, 1175
BpiI	GAAGAC	3 cut(s)	1326, 1365, 1586
BpmI	CTGGAG	1 cut(s)	1101
Bpu10I	CCTNAGC	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	70
BsaWI	WCCGGW	2 cut(s)	96, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	799
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	1422
BseBI	CCWGG	2 cut(s)	46, 419
BseGI	GGATG	4 cut(s)	487, 511, 1315, 1321
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	1 cut(s)	1422
BseMII	CTCAG	3 cut(s)	689, 690, 1077
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	3 cut(s)	364, 667, 1090
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	44, 187, 417
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	926
BsiSI	CCGG	2 cut(s)	97, 979
BslFI	GGGAC	2 cut(s)	25, 708
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	25, 708
BsnI	GGCC	3 cut(s)	44, 187, 417
Bsp1286I	GDGCHC	1 cut(s)	926
Bsp143I	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
BspACI	CCGC	3 cut(s)	613, 767, 824
BspANI	GGCC	3 cut(s)	44, 187, 417
BspCNI	CTCAG	3 cut(s)	689, 690, 1076
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	2 cut(s)	57, 961
BspMI	ACCTGC	1 cut(s)	1381
BspPI	GGATC	3 cut(s)	429, 653, 1150
BsrDI	GCAATG	1 cut(s)	1422
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	799
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
Bst2UI	CCWGG	2 cut(s)	46, 419
Bst4CI	ACNGT	5 cut(s)	136, 161, 368, 402, 717
BstDEI	CTNAG	5 cut(s)	15, 60, 676, 698, 1063
BstF5I	GGATG	4 cut(s)	487, 511, 1315, 1321
BstH2I	RGCGCY	1 cut(s)	1559
BstHHI	GCGC	1 cut(s)	1558
BstKTI	GATC	6 cut(s)	424, 532, 661, 1145, 1195, 1232
BstMBI	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 361, 1094, 1103
BstNI	CCWGG	2 cut(s)	46, 419
BstNSI	RCATGY	2 cut(s)	812, 841
BstSCI	CCNGG	2 cut(s)	44, 417
BstV1I	GCAGC	3 cut(s)	364, 667, 1090
BstV2I	GAAGAC	3 cut(s)	1326, 1365, 1586
BstX2I	RGATCY	1 cut(s)	1142
BstYI	RGATCY	1 cut(s)	1142
Bsu36I	CCTNAGG	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	44, 187, 417
BtsCI	GGATG	4 cut(s)	487, 511, 1315, 1321
BveI	ACCTGC	1 cut(s)	1381
CaiI	CAGNNNCTG	1 cut(s)	358
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	1 cut(s)	1558
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	42, 56, 229
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	802
CspAI	ACCGGT	1 cut(s)	96
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	5 cut(s)	15, 60, 676, 698, 1063
DpnI	GATC	6 cut(s)	423, 531, 660, 1144, 1194, 1231
DpnII	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
DrdI	GACNNNNNNGTC	1 cut(s)	794
DseDI	GACNNNNNNGTC	1 cut(s)	794
EciI	GGCGGA	1 cut(s)	839
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	56, 229
Eco57I	CTGAAG	4 cut(s)	380, 902, 1320, 1359
Eco81I	CCTNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	44, 417
EcoT22I	ATGCAT	1 cut(s)	1168
FalI	AAGNNNNNCTT	2 cut(s)	974, 1006
FaqI	GGGAC	2 cut(s)	25, 708
FauI	CCCGC	1 cut(s)	606
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	3 cut(s)	353, 681, 1104
FokI	GGATG	4 cut(s)	474, 498, 1322, 1328
Fsp4HI	GCNGC	3 cut(s)	353, 681, 1104
FspBI	CTAG	3 cut(s)	950, 1026, 1035
GlaI	GCGC	1 cut(s)	1557
GluI	GCNGC	3 cut(s)	353, 681, 1104
GsuI	CTGGAG	1 cut(s)	1101
HaeII	RGCGCY	1 cut(s)	1559
HaeIII	GGCC	3 cut(s)	44, 187, 417
HapII	CCGG	2 cut(s)	97, 979
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	1558
Hin6I	GCGC	1 cut(s)	1556
HinP1I	GCGC	1 cut(s)	1556
HincII	GTYRAC	2 cut(s)	1213, 1526
HindII	GTYRAC	2 cut(s)	1213, 1526
HinfI	GANTC	6 cut(s)	90, 745, 1031, 1283, 1370, 1439
HpaII	CCGG	2 cut(s)	97, 979
HphI	GGTGA	3 cut(s)	298, 635, 1391
Hpy166II	GTNNAC	2 cut(s)	1213, 1526
Hpy188I	TCNGA	5 cut(s)	360, 921, 1066, 1147, 1369
Hpy188III	TCNNGA	8 cut(s)	87, 373, 554, 735, 1035, 1080, 1175, 1462
Hpy8I	GTNNAC	2 cut(s)	1213, 1526
HpyAV	CCTTC	4 cut(s)	685, 926, 1012, 1273
HpyCH4III	ACNGT	5 cut(s)	136, 161, 368, 402, 717
HpyCH4IV	ACGT	3 cut(s)	212, 463, 1009
HpyCH4V	TGCA	8 cut(s)	154, 225, 267, 725, 885, 1050, 1166, 1427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 361, 1094, 1103
HpyF3I	CTNAG	5 cut(s)	15, 60, 676, 698, 1063
HpySE526I	ACGT	3 cut(s)	212, 463, 1009
HspAI	GCGC	1 cut(s)	1556
Kzo9I	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
LmnI	GCTCC	2 cut(s)	19, 210
Lsp1109I	GCAGC	3 cut(s)	364, 667, 1090
LweI	GCATC	6 cut(s)	364, 754, 1090, 1153, 1168, 1175
MaeI	CTAG	3 cut(s)	950, 1026, 1035
MaeII	ACGT	3 cut(s)	212, 463, 1009
MaeIII	GTNAC	3 cut(s)	544, 592, 701
MalI	GATC	6 cut(s)	423, 531, 660, 1144, 1194, 1231
MboI	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
MboII	GAAGA	8 cut(s)	208, 551, 740, 1239, 1331, 1365, 1394, 1552
MflI	RGATCY	1 cut(s)	1142
MhlI	GDGCHC	1 cut(s)	926
MluCI	AATT	8 cut(s)	250, 316, 335, 447, 738, 901, 1156, 1348
MlyI	GAGTC	3 cut(s)	1277, 1379, 1448
MmeI	TCCRAC	3 cut(s)	978, 1510, 1518
MnlI	CCTC	8 cut(s)	94, 242, 561, 685, 1060, 1288, 1300, 1557
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	1 cut(s)	1583
MseI	TTAA	6 cut(s)	126, 257, 338, 777, 966, 975
MslI	CAYNNNNRTG	3 cut(s)	516, 813, 1115
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	2 cut(s)	97, 979
MspR9I	CCNGG	2 cut(s)	46, 419
MvaI	CCWGG	2 cut(s)	46, 419
MwoI	GCNNNNNNNGC	4 cut(s)	184, 361, 1094, 1103
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
NlaIV	GGNNCC	2 cut(s)	57, 961
NmuCI	GTSAC	2 cut(s)	544, 592
NsiI	ATGCAT	1 cut(s)	1168
NspI	RCATGY	2 cut(s)	812, 841
PagI	TCATGA	1 cut(s)	1174
PceI	AGGCCT	1 cut(s)	187
PciI	ACATGT	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	1583
PfeI	GAWTC	3 cut(s)	90, 745, 1031
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	354, 682, 1105
PleI	GAGTC	3 cut(s)	1277, 1378, 1447
PpsI	GAGTC	3 cut(s)	1277, 1378, 1447
PpuMI	RGGWCCY	1 cut(s)	56
PscI	ACATGT	1 cut(s)	808
PshBI	ATTAAT	1 cut(s)	966
PsiI	TTATAA	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	44, 417
PspGI	CCWGG	2 cut(s)	44, 417
PspN4I	GGNNCC	2 cut(s)	57, 961
PspPI	GGNCC	3 cut(s)	42, 56, 229
PspPPI	RGGWCCY	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	1142
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	3 cut(s)	516, 813, 1115
SaqAI	TTAA	6 cut(s)	126, 257, 338, 777, 966, 975
SatI	GCNGC	3 cut(s)	353, 681, 1104
Sau3AI	GATC	6 cut(s)	421, 529, 658, 1142, 1192, 1229
Sau96I	GGNCC	3 cut(s)	42, 56, 229
ScaI	AGTACT	1 cut(s)	803
SchI	GAGTC	3 cut(s)	1277, 1379, 1448
ScrFI	CCNGG	2 cut(s)	46, 419
SduI	GDGCHC	1 cut(s)	926
SfaNI	GCATC	6 cut(s)	364, 754, 1090, 1153, 1168, 1175
SinI	GGWCC	2 cut(s)	56, 229
SmiMI	CAYNNNNRTG	3 cut(s)	516, 813, 1115
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	1025
Sse9I	AATT	8 cut(s)	250, 316, 335, 447, 738, 901, 1156, 1348
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	613, 767, 824
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	3 cut(s)	950, 1026, 1035
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	44, 417
TaaI	ACNGT	5 cut(s)	136, 161, 368, 402, 717
TaiI	ACGT	3 cut(s)	215, 466, 1012
TaqI	TCGA	1 cut(s)	93
TaqII	GACCGA	1 cut(s)	1139
TasI	AATT	8 cut(s)	250, 316, 335, 447, 738, 901, 1156, 1348
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	3 cut(s)	90, 745, 1031
Tru1I	TTAA	6 cut(s)	126, 257, 338, 777, 966, 975
Tru9I	TTAA	6 cut(s)	126, 257, 338, 777, 966, 975
TseFI	GTSAC	2 cut(s)	544, 592
TseI	GCWGC	3 cut(s)	352, 680, 1103
Tsp45I	GTSAC	2 cut(s)	544, 592
VpaK11BI	GGWCC	2 cut(s)	56, 229
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	4 cut(s)	250, 316, 447, 901
XbaI	TCTAGA	1 cut(s)	1034
XceI	RCATGY	2 cut(s)	812, 841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1501
XmnI	GAANNNNTTC	1 cut(s)	1583
XspI	CTAG	3 cut(s)	950, 1026, 1035
ZrmI	AGTACT	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.