Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0022657

Physical Location & Seq

Genomic Coordinates Reverse (-)

27979126 .. 27980964

Gene Structure 1839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAAGCTATGGTTTTGAAATGGAAACATTTGAATTCCTTAATATATTGCAAGTTCATGGCTTCCCAAAGGTTATGGGAGCTCTTACTCACCTTGATAAAGTTCAAAGAAGCAAATAAATTAAAGAAAACAAAGCAGCATCTGAAGCACCGTTTCTGGACTGAAATATATGATGGTGCTAAACTGTTTTATTTATCTGGCCTGGTTCATGGGAAGTTTGTCAAAAGAGAAATTCACAATCTGGCACGTTTCATATCTGTTATGAAGTTTCATCCTTTATCTTGGCAAACTGCTCATCCTTATGTTTTGGTAGATCGTTTTGAAGATGTCACTCCTCCTGAAAATGTCCATATGAATAACAAATGTGATAGATATGTCACACACTACGGTTATCTGCGGGGTTGTAGCGTGAAGAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTATAATGTTTCTGGTATGACAGCCATGACTGATCCTTGTCCTTTACCCTCAGCTGCCAGAAAGAAGGGACTGAGTAACAAGGAAAAACTGTTTTATGCACCCATGTCTGGAATTGGGAATCTTCTGTATGACAAAGATGCGGTCTATATTAACATAAATGACCACTCTGTCCAGTACTCACATGTTGATGATAAGGCGGAAGCAACAGATATGAGCACAAAATATTCGGTTGATGAAAAGCTAGAGCAGGGTTCCATTAATCTTTTTAACCGGAAGCCTAAGTTATCGTTGGAAACTCAACGTGGTGGGAAGGATACTAGTGAATCTAGAGAACAGATTTGCATGATAGAGAACTCAGAGGATTATCAGTCTGGAGAAGCTACCAAAGCTGATGCTGCTGACATATATGTGCTGACCGATAGTGAATCTGATAGAGAAAATTGTGATGCATCATATCATGATGCTACTCATAAAGATCAGTTGAAGAAATATGTTGACTTTCATAATGGAAGATCAAGGAGAAAAGTCATCTTTGGAAATGGCTTTGATGATAATGATATGAAGGTGCAAAAACTAGACCTTAGTATATCTGATGAGGAATATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

352

Amino Acids

40.54

Weight (kDa)

8.31

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	89 - 162	3.9e-24	AARP2CN (NUC121) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022657)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114591
rosa_samantha	Rh2AG248800 Rh2CG252400 Rh2DG256900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AarI	CACCTGC	1 cut(s)	428
AasI	GACNNNNNNGTC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	428
AciI	CCGC	3 cut(s)	397, 590, 647
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	34, 231
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	19, 34, 106, 323, 934
AhlI	ACTAGT	1 cut(s)	767
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	6 cut(s)	8, 82, 503, 691, 830, 839
AluI	AGCT	6 cut(s)	8, 82, 503, 691, 830, 839
Alw21I	GWGCWC	2 cut(s)	84, 668
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	136, 503, 845
ApoI	RAATTY	2 cut(s)	34, 231
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AseI	ATTAAT	1 cut(s)	708
AsuHPI	GGTGA	2 cut(s)	82, 458
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	84, 668
BbvCI	CCTCAGC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	148, 490, 832
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	757
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	4 cut(s)	692, 768, 777, 1025
BfuAI	ACCTGC	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	3 cut(s)	137, 504, 846
BlsI	GCNGC	3 cut(s)	138, 505, 847
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	6 cut(s)	148, 577, 832, 886, 901, 908
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	271, 295
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	3 cut(s)	512, 513, 819
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	148, 490, 832
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	84, 668
BsiSI	CCGG	1 cut(s)	721
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	84, 668
Bsp143I	GATC	4 cut(s)	313, 481, 925, 962
BspACI	CCGC	3 cut(s)	397, 590, 647
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	512, 513, 818
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	622
BssMI	GATC	4 cut(s)	313, 481, 925, 962
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	4 cut(s)	152, 186, 389, 540
BstDEI	CTNAG	5 cut(s)	499, 521, 729, 805, 1031
BstF5I	GGATG	2 cut(s)	271, 295
BstKTI	GATC	4 cut(s)	316, 484, 928, 965
BstMBI	GATC	4 cut(s)	313, 481, 925, 962
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 836, 845
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	148, 490, 832
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	271, 295
BveI	ACCTGC	1 cut(s)	428
CaiI	CAGNNNCTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	907
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	7 cut(s)	58, 209, 475, 553, 632, 793, 908
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	5 cut(s)	499, 521, 729, 805, 1031
DpnI	GATC	4 cut(s)	315, 483, 927, 964
DpnII	GATC	4 cut(s)	313, 481, 925, 962
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EciI	GGCGGA	1 cut(s)	662
Ecl136II	GAGCTC	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	901
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	7 cut(s)	61, 212, 478, 556, 635, 796, 911
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	7 cut(s)	57, 208, 474, 552, 631, 792, 907
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	137, 504, 846
FokI	GGATG	2 cut(s)	258, 282
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	137, 504, 846
FspBI	CTAG	4 cut(s)	692, 768, 777, 1025
GluI	GCNGC	3 cut(s)	137, 504, 846
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	721
Hin1II	CATG	7 cut(s)	61, 212, 478, 556, 635, 796, 911
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HinfI	GANTC	4 cut(s)	427, 568, 773, 875
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	2 cut(s)	82, 458
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	4 cut(s)	144, 808, 880, 1042
Hpy188III	TCNNGA	6 cut(s)	157, 338, 558, 777, 822, 908
Hpy8I	GTNNAC	1 cut(s)	946
HpyAV	CCTTC	3 cut(s)	508, 754, 1006
HpyCH4III	ACNGT	4 cut(s)	152, 186, 389, 540
HpyCH4IV	ACGT	2 cut(s)	247, 751
HpyCH4V	TGCA	6 cut(s)	51, 437, 548, 792, 899, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 836, 845
HpyF3I	CTNAG	5 cut(s)	499, 521, 729, 805, 1031
HpySE526I	ACGT	2 cut(s)	247, 751
Hsp92II	CATG	7 cut(s)	61, 212, 478, 556, 635, 796, 911
Kzo9I	GATC	4 cut(s)	313, 481, 925, 962
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	148, 490, 832
LweI	GCATC	6 cut(s)	148, 577, 832, 886, 901, 908
MaeI	CTAG	4 cut(s)	692, 768, 777, 1025
MaeII	ACGT	2 cut(s)	247, 751
MaeIII	GTNAC	3 cut(s)	328, 376, 524
MalI	GATC	4 cut(s)	315, 483, 927, 964
MboI	GATC	4 cut(s)	313, 481, 925, 962
MboII	GAAGA	5 cut(s)	335, 424, 563, 946, 972
MhlI	GDGCHC	2 cut(s)	84, 668
MluCI	AATT	5 cut(s)	34, 119, 231, 561, 889
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	4 cut(s)	345, 508, 802, 1039
Mph1103I	ATGCAT	1 cut(s)	901
MseI	TTAA	5 cut(s)	41, 122, 600, 708, 717
MslI	CAYNNNNRTG	3 cut(s)	300, 636, 857
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	721
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	145, 836, 845
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	4 cut(s)	313, 481, 925, 962
NlaIII	CATG	7 cut(s)	61, 212, 478, 556, 635, 796, 911
NlaIV	GGNNCC	1 cut(s)	703
NmuCI	GTSAC	2 cut(s)	328, 376
NsiI	ATGCAT	1 cut(s)	901
NspI	RCATGY	1 cut(s)	635
PagI	TCATGA	1 cut(s)	907
PaqCI	CACCTGC	1 cut(s)	428
PciI	ACATGT	1 cut(s)	631
PfeI	GAWTC	4 cut(s)	427, 568, 773, 875
PkrI	GCNGC	3 cut(s)	138, 505, 847
PscI	ACATGT	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	3 cut(s)	300, 636, 857
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	5 cut(s)	41, 122, 600, 708, 717
SatI	GCNGC	3 cut(s)	137, 504, 846
Sau3AI	GATC	4 cut(s)	313, 481, 925, 962
ScaI	AGTACT	1 cut(s)	626
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	84, 668
SfaNI	GCATC	6 cut(s)	148, 577, 832, 886, 901, 908
SmiMI	CAYNNNNRTG	3 cut(s)	300, 636, 857
SpeI	ACTAGT	1 cut(s)	767
Sse9I	AATT	5 cut(s)	34, 119, 231, 561, 889
SsiI	CCGC	3 cut(s)	397, 590, 647
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	4 cut(s)	692, 768, 777, 1025
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	152, 186, 389, 540
TaiI	ACGT	2 cut(s)	250, 754
TaqII	GACCGA	1 cut(s)	881
TasI	AATT	5 cut(s)	34, 119, 231, 561, 889
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	4 cut(s)	427, 568, 773, 875
Tru1I	TTAA	5 cut(s)	41, 122, 600, 708, 717
Tru9I	TTAA	5 cut(s)	41, 122, 600, 708, 717
TseFI	GTSAC	2 cut(s)	328, 376
TseI	GCWGC	3 cut(s)	136, 503, 845
Tsp45I	GTSAC	2 cut(s)	328, 376
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	2 cut(s)	34, 231
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	1 cut(s)	635
XspI	CTAG	4 cut(s)	692, 768, 777, 1025
ZrmI	AGTACT	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.