Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0022657

Physical Location & Seq

Genomic Coordinates Reverse (-)

26728728 .. 26730584

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG252400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAAGCTATGGTTTTGAAATGGAAACATTTGAATTCCTTAATATATTGCAAGTTCATGGCTTCCCAAAGGTTATGGGAGTTCTTACTCACCTTGATAAATTTCAAAGAAGCAAATAAATTAAAGAAAACAAAGCAGCATCTGAAGCACCGTTTCTGGACTGAAATATATGATGGTGCTAAACTGTTTTATTTATCTGGCCTGGATCATGGGAAGTTTGTCAAAAGAGAAATTCACAATCTGGCACAAATGTCACGCACTATGGTTATCTGCGGGGTTAATTGTAGCATGAAGAAAGGAACAGAGATTCATATTGCAGGTGTTGGTGATTATAATGTTTCTGGTATGACAGCCATGACTGATCCTTGTCCTTTACCCTCAGCTGCCAGAAAGAAGGGACTGAGTAACAAGGAAAAACTGTTTTATGCACCCATGTCTGGAATTGGGAATCTTCTGTATGACAAAGATGCGGTCTATATTAACATAAATGACCACTTTGTCCAGTACTCACATGTTGATGATAAGGCGGAAGCAACAGACATGCTTTCATTTGATGACTACTTTTGTTCTTGTGTAGCAGGAAAGTGCAAAGATTTGGGTGTGAATTTGGTAAAATCCCTTCAGAGCACAAAATATTCGGTTGATGAAAAGCTAGAGCAGGGTTCCATTAATCTTTTTAACCGGAAGCCTAACTTATCGTTGGAAACTCAACGTGGTGGGAAGGATACTAGTGAATCTAGAGAACAGATTTGCATGATAGAGAACTCAGAGGATTATCAGTCTGGAGAAGCTACCAAAGCTGATGCTGCTGACATATATGTGCTGACCGATAGTGAATATAGTGGATCTGATAGAGAAAATTGTGATGCATCATATCATGATGCTACTCATAAAGATCAGTTGATGAAATATGTTGACTTTCATAATGGAAGATCAAGGAGAAAAGTCATCTTTGGAAATGGCTTTGATGATAATGATATGAAGGTGCAAAAACTAGACCTTAGTATATCTGATGAGGAATATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0001882 GO:0001883 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034470 GO:0034511 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042274 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

342

Amino Acids

38.97

Weight (kDa)

6.42

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022657)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114591
rosa_samantha	Rh2AG248800 Rh2CG252400 Rh2DG256900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AarI	CACCTGC	1 cut(s)	308
AasI	GACNNNNNNGTC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	308
AciI	CCGC	3 cut(s)	273, 470, 527
AclWI	GGATC	3 cut(s)	213, 356, 853
AcsI	RAATTY	4 cut(s)	34, 100, 231, 604
AcuI	CTGAAG	2 cut(s)	164, 605
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	19, 34, 106
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	5 cut(s)	8, 383, 652, 791, 800
AluI	AGCT	5 cut(s)	8, 383, 652, 791, 800
Alw21I	GWGCWC	1 cut(s)	629
AlwI	GGATC	3 cut(s)	213, 356, 853
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	136, 383, 806
ApoI	RAATTY	4 cut(s)	34, 100, 231, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
AseI	ATTAAT	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	82, 338
BarI	GAAGNNNNNNTAC	2 cut(s)	603, 635
Bbv12I	GWGCWC	1 cut(s)	629
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	148, 370, 793
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	718
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	4 cut(s)	653, 729, 738, 995
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	3 cut(s)	137, 384, 807
BlsI	GCNGC	3 cut(s)	138, 385, 808
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	664
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	6 cut(s)	148, 457, 793, 856, 871, 878
BpmI	CTGGAG	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	3 cut(s)	392, 393, 780
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	3 cut(s)	148, 370, 793
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	682
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	5 cut(s)	205, 361, 845, 895, 932
BspACI	CCGC	3 cut(s)	273, 470, 527
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	392, 393, 779
BspHI	TCATGA	1 cut(s)	877
BspLI	GGNNCC	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	3 cut(s)	213, 356, 853
BsrI	ACTGG	1 cut(s)	502
BssMI	GATC	5 cut(s)	205, 361, 845, 895, 932
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	152, 186, 420
BstDEI	CTNAG	4 cut(s)	379, 401, 766, 1001
BstKTI	GATC	5 cut(s)	208, 364, 848, 898, 935
BstMBI	GATC	5 cut(s)	205, 361, 845, 895, 932
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 797, 806
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	2 cut(s)	515, 544
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	148, 370, 793
BstX2I	RGATCY	1 cut(s)	845
BstYI	RGATCY	1 cut(s)	845
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	877
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	9 cut(s)	58, 209, 289, 355, 433, 512, 541, 754, 878
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	4 cut(s)	379, 401, 766, 1001
DpnI	GATC	5 cut(s)	207, 363, 847, 897, 934
DpnII	GATC	5 cut(s)	205, 361, 845, 895, 932
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	164, 605
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	871
FaeI	CATG	9 cut(s)	61, 212, 292, 358, 436, 515, 544, 757, 881
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	9 cut(s)	57, 208, 288, 354, 432, 511, 540, 753, 877
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	3 cut(s)	137, 384, 807
Fsp4HI	GCNGC	3 cut(s)	137, 384, 807
FspBI	CTAG	4 cut(s)	653, 729, 738, 995
GluI	GCNGC	3 cut(s)	137, 384, 807
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	682
Hin1II	CATG	9 cut(s)	61, 212, 292, 358, 436, 515, 544, 757, 881
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HinfI	GANTC	3 cut(s)	307, 448, 734
HpaII	CCGG	1 cut(s)	682
HphI	GGTGA	2 cut(s)	82, 338
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	5 cut(s)	144, 624, 769, 850, 1012
Hpy188III	TCNNGA	5 cut(s)	157, 438, 738, 783, 878
Hpy8I	GTNNAC	1 cut(s)	916
HpyAV	CCTTC	4 cut(s)	388, 629, 715, 976
HpyCH4III	ACNGT	3 cut(s)	152, 186, 420
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	7 cut(s)	51, 317, 428, 588, 753, 869, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 797, 806
HpyF3I	CTNAG	4 cut(s)	379, 401, 766, 1001
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	9 cut(s)	61, 212, 292, 358, 436, 515, 544, 757, 881
Kzo9I	GATC	5 cut(s)	205, 361, 845, 895, 932
Lsp1109I	GCAGC	3 cut(s)	148, 370, 793
LweI	GCATC	6 cut(s)	148, 457, 793, 856, 871, 878
MaeI	CTAG	4 cut(s)	653, 729, 738, 995
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	2 cut(s)	252, 404
MalI	GATC	5 cut(s)	207, 363, 847, 897, 934
MboI	GATC	5 cut(s)	205, 361, 845, 895, 932
MboII	GAAGA	3 cut(s)	304, 443, 942
MflI	RGATCY	1 cut(s)	845
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	8 cut(s)	34, 100, 119, 231, 280, 441, 604, 859
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	3 cut(s)	388, 763, 1009
Mph1103I	ATGCAT	1 cut(s)	871
MseI	TTAA	6 cut(s)	41, 122, 279, 480, 669, 678
MslI	CAYNNNNRTG	2 cut(s)	516, 818
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	682
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	145, 797, 806
NdeII	GATC	5 cut(s)	205, 361, 845, 895, 932
NlaIII	CATG	9 cut(s)	61, 212, 292, 358, 436, 515, 544, 757, 881
NlaIV	GGNNCC	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	871
NspI	RCATGY	2 cut(s)	515, 544
PagI	TCATGA	1 cut(s)	877
PaqCI	CACCTGC	1 cut(s)	308
PciI	ACATGT	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	307, 448, 734
PkrI	GCNGC	3 cut(s)	138, 385, 808
PscI	ACATGT	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	845
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	2 cut(s)	516, 818
SaqAI	TTAA	6 cut(s)	41, 122, 279, 480, 669, 678
SatI	GCNGC	3 cut(s)	137, 384, 807
Sau3AI	GATC	5 cut(s)	205, 361, 845, 895, 932
ScaI	AGTACT	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	6 cut(s)	148, 457, 793, 856, 871, 878
SmiMI	CAYNNNNRTG	2 cut(s)	516, 818
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	8 cut(s)	34, 100, 119, 231, 280, 441, 604, 859
SsiI	CCGC	3 cut(s)	273, 470, 527
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	4 cut(s)	653, 729, 738, 995
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	152, 186, 420
TaiI	ACGT	1 cut(s)	715
TaqII	GACCGA	1 cut(s)	842
TasI	AATT	8 cut(s)	34, 100, 119, 231, 280, 441, 604, 859
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	307, 448, 734
Tru1I	TTAA	6 cut(s)	41, 122, 279, 480, 669, 678
Tru9I	TTAA	6 cut(s)	41, 122, 279, 480, 669, 678
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	3 cut(s)	136, 383, 806
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	8 cut(s)	46, 299, 305, 537, 660, 911, 920, 995
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	4 cut(s)	34, 100, 231, 604
XbaI	TCTAGA	1 cut(s)	737
XceI	RCATGY	2 cut(s)	515, 544
XspI	CTAG	4 cut(s)	653, 729, 738, 995
ZrmI	AGTACT	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.