Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022639

Physical Location & Seq

Genomic Coordinates Forward (+)

27958008 .. 27959935

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48889

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCAAGAAAATGCCTTAAAAGGGCCCTTTCCTATGGGTATCTTCAATATGTCATCTTTGACTATTGTAACTTTCTATGAAAACAACTTGAATGGTAGAATTCCGAACAATATATGTCAACATCTTCCAAATATTCAAGCGTTGAATTTAGGTATCAATCAGTTTGATGGTCCACTTCCATCCAAGTTATGGCAATGCAAACAACTTCTTACTTTGGAGTTGAGGGATAACATGTTTAGTGGAAGCATACCTAAAGAAATTGGGAACTTAACTCGGATAAAGAAGATTAGCCTTGTCACAAACAGCTTGACAGGTACTATACCATATGATCAGTTTGGTTATCTTCCAAATTTAGAGGTACTGGTGCTCTATGTGAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATGTCCACAATAATAGCATTAAATATTGGCCTCAATCAGCTTTCAGGTAGCCTCCCAGCAAACATAGGCCTTGCGCTTCCAAACCTAGAAGAGTTTAGAGCAGGAGGGAATCACCTCAGTGGAATAATCCCCAAATCCATCTCCCATGCTTCTGAGCTTCAGATTCTAAGTCTGGGAGGTAACTCTTTTTCTGGATTTATTCCAAGAACTCTGTGCCTCTCGACAAACCTTGAATGGCTCGCATTATTCATCAATAATTTGACCATTGATACCTCTACTTCAGAAGTTAATATTTTGTCTTGTCTGGCAAATCTTAGAAATTTGAGGTATTTAGCCTTCTCAAGCAATCCATTAAATACCAAGCTTCCGGTTGTCTACGGTAATTTCTCTGCATCACTTCAAAATCTTTATTTAAAAGATTGCAGCTTGAGAGGTAACATCCCTAGTGATATAGGCAACTTGAGTAGCTTGATAGTTTTGTCCCTTGGACACAATCAATTGAGCGAGCCAATTCCAAGATCAATGGGAAGACTACTGAATCTTCAAGGTGGGAATCAACTCTCTGGTTATGTACCTTCCTGCTTGGGTAATCTAACAGCATCTCTAAGAACTCTATACTTAGACTCCAATTTGTTGAATTCCACAATACCATCTACCTTGTGGGGACTTACAGATATCTTGCAAATAGACTTGTCATCCAATTCTCTAATTGGACCTCTATCAGATGGTGTTGGTAATTTGAAAGTTGCTACACACATAAATGTATCATACAACCAATTATCTGGTAGTATAACGAGCAGCGTTGGGAGTTTATTGAATTTGGTCAATCTCTCTTTAGCACATAATAATCTAGAAGGCCTTATTCCTAGTTCCTTTGCAACCTGCATAAGCTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

437

Amino Acids

47.14

Weight (kDa)

6.38

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	33 - 196	4.5e-07	Leucine-rich repeat region
LRR_14	PF23598	231 - 320	2.3e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022639)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115751
rosa_roxburghii	Rroxscaffold_1G00065270
rosa_rugosa	Rorug04G0454100
rosa_samantha	Rh5BG081100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1304
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	789
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	6 cut(s)	99, 145, 349, 733, 1051, 1231
AcuI	CTGAAG	2 cut(s)	557, 678
AfaI	GTAC	3 cut(s)	316, 360, 987
AfiI	CCNNNNNNNGG	2 cut(s)	21, 189
AflIII	ACRYGT	1 cut(s)	231
AleI	CACNNNNGTG	1 cut(s)	531
AluBI	AGCT	7 cut(s)	306, 454, 571, 778, 840, 882, 1305
AluI	AGCT	7 cut(s)	306, 454, 571, 778, 840, 882, 1305
Alw21I	GWGCWC	1 cut(s)	369
AoxI	GGCC	5 cut(s)	23, 388, 442, 481, 1270
ApaI	GGGCCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	837, 1212
ApoI	RAATTY	6 cut(s)	99, 145, 349, 733, 1051, 1231
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	4 cut(s)	23, 24, 170, 1127
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	170, 1127
BaeGI	GKGCMC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BbsI	GAAGAC	1 cut(s)	949
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	849, 1224
BccI	CCATC	6 cut(s)	161, 187, 406, 560, 1072, 1133
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	4 cut(s)	500, 858, 1265, 1281
BfuAI	ACCTGC	1 cut(s)	1304
BisI	GCNGC	2 cut(s)	838, 1213
BlsI	GCNGC	2 cut(s)	839, 1214
Bme18I	GGWCC	2 cut(s)	170, 1127
BmgT120I	GGNCC	4 cut(s)	23, 24, 170, 1127
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	2 cut(s)	815, 1022
BpiI	GAAGAC	1 cut(s)	949
BpuEI	CTTGAG	3 cut(s)	739, 862, 895
BsaJI	CCNNGG	1 cut(s)	898
BsaWI	WCCGGW	1 cut(s)	781
BsaXI	ACNNNNNCTCC	2 cut(s)	1022, 1052
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 189
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	898
BseGI	GGATG	4 cut(s)	179, 398, 852, 1109
BseLI	CCNNNNNNNGG	2 cut(s)	21, 189
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	544, 558
BseNI	ACTGG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	849, 1224
BseYI	CCCAGC	1 cut(s)	469
BshFI	GGCC	5 cut(s)	25, 390, 444, 483, 1272
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	782
BslFI	GGGAC	2 cut(s)	880, 1092
BslI	CCNNNNNNNGG	2 cut(s)	21, 189
BsmFI	GGGAC	2 cut(s)	880, 1092
BsnI	GGCC	5 cut(s)	25, 390, 444, 483, 1272
Bsp120I	GGGCCC	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	27, 369
Bsp143I	GATC	2 cut(s)	328, 932
BspANI	GGCC	5 cut(s)	25, 390, 444, 483, 1272
BspCNI	CTCAG	2 cut(s)	543, 559
BspLI	GGNNCC	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	1304
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	898
BssMI	GATC	2 cut(s)	328, 932
BssT1I	CCWWGG	1 cut(s)	898
Bst4CI	ACNGT	1 cut(s)	794
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	654, 920
BstDEI	CTNAG	7 cut(s)	530, 567, 581, 728, 1019, 1033, 1306
BstF5I	GGATG	4 cut(s)	179, 398, 852, 1109
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	2 cut(s)	331, 935
BstMBI	GATC	2 cut(s)	328, 932
BstNSI	RCATGY	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	849, 1224
BstV2I	GAAGAC	1 cut(s)	949
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BsuRI	GGCC	5 cut(s)	25, 390, 444, 483, 1272
BtsCI	GGATG	4 cut(s)	179, 398, 852, 1109
BtsIMutI	CAGTG	1 cut(s)	538
BveI	ACCTGC	1 cut(s)	1304
Cac8I	GCNNGC	2 cut(s)	654, 920
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	4 cut(s)	23, 24, 170, 1127
Csp6I	GTAC	3 cut(s)	315, 359, 986
CviAII	CATG	2 cut(s)	232, 560
CviQI	GTAC	3 cut(s)	315, 359, 986
DdeI	CTNAG	7 cut(s)	530, 567, 581, 728, 1019, 1033, 1306
DpnI	GATC	2 cut(s)	330, 934
DpnII	GATC	2 cut(s)	328, 932
DraI	TTTAAA	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	898
Eco147I	AGGCCT	2 cut(s)	483, 1272
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	1090
Eco47I	GGWCC	2 cut(s)	170, 1127
Eco57I	CTGAAG	2 cut(s)	557, 678
EcoO109I	RGGNCCY	2 cut(s)	23, 24
EcoRI	GAATTC	2 cut(s)	99, 1051
EcoRV	GATATC	1 cut(s)	1090
EcoT14I	CCWWGG	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	2 cut(s)	235, 563
FaqI	GGGAC	2 cut(s)	880, 1092
FatI	CATG	2 cut(s)	231, 559
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	2 cut(s)	838, 1213
FokI	GGATG	4 cut(s)	166, 385, 839, 1096
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	838, 1213
FspBI	CTAG	4 cut(s)	500, 858, 1265, 1281
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	2 cut(s)	838, 1213
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	5 cut(s)	25, 390, 444, 483, 1272
HapII	CCGG	1 cut(s)	782
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	235, 563
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HindIII	AAGCTT	2 cut(s)	776, 1303
HinfI	GANTC	5 cut(s)	523, 577, 952, 967, 1037
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	4 cut(s)	119, 173, 420, 790
Hpy188I	TCNGA	6 cut(s)	105, 276, 568, 576, 697, 1138
Hpy188III	TCNNGA	3 cut(s)	606, 634, 1265
Hpy8I	GTNNAC	4 cut(s)	119, 173, 420, 790
HpyAV	CCTTC	3 cut(s)	760, 999, 1262
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4V	TGCA	7 cut(s)	4, 198, 806, 837, 1096, 1292, 1299
HpyF3I	CTNAG	7 cut(s)	530, 567, 581, 728, 1019, 1033, 1306
Hsp92II	CATG	2 cut(s)	235, 563
HspAI	GCGC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 932
Lsp1109I	GCAGC	2 cut(s)	849, 1224
LweI	GCATC	2 cut(s)	815, 1022
MaeI	CTAG	4 cut(s)	500, 858, 1265, 1281
MaeIII	GTNAC	4 cut(s)	67, 295, 593, 848
MalI	GATC	2 cut(s)	330, 934
MboI	GATC	2 cut(s)	328, 932
MboII	GAAGA	8 cut(s)	34, 116, 295, 335, 400, 515, 947, 954
MfeI	CAATTG	1 cut(s)	911
MhlI	GDGCHC	2 cut(s)	27, 369
MlsI	TGGCCA	1 cut(s)	390
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	1031
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	6 cut(s)	17, 269, 434, 702, 767, 827
MslI	CAYNNNNRTG	2 cut(s)	531, 1173
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	1 cut(s)	782
MunI	CAATTG	1 cut(s)	911
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	2 cut(s)	328, 932
NlaIII	CATG	2 cut(s)	235, 563
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	531
PceI	AGGCCT	2 cut(s)	483, 1272
PciI	ACATGT	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	523, 577, 952, 967
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	839, 1214
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
PscI	ACATGT	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	25
PspOMI	GGGCCC	1 cut(s)	23
PspPI	GGNCC	4 cut(s)	23, 24, 170, 1127
RsaI	GTAC	3 cut(s)	316, 360, 987
RsaNI	GTAC	3 cut(s)	315, 359, 986
RseI	CAYNNNNRTG	2 cut(s)	531, 1173
SaqAI	TTAA	6 cut(s)	17, 269, 434, 702, 767, 827
SatI	GCNGC	2 cut(s)	838, 1213
Sau3AI	GATC	2 cut(s)	328, 932
Sau96I	GGNCC	4 cut(s)	23, 24, 170, 1127
SchI	GAGTC	1 cut(s)	1031
SduI	GDGCHC	2 cut(s)	27, 369
SfaNI	GCATC	2 cut(s)	815, 1022
SinI	GGWCC	2 cut(s)	170, 1127
SmiMI	CAYNNNNRTG	2 cut(s)	531, 1173
SmlI	CTYRAG	3 cut(s)	754, 841, 874
SmoI	CTYRAG	3 cut(s)	754, 841, 874
SseBI	AGGCCT	2 cut(s)	483, 1272
SspI	AATATT	3 cut(s)	133, 439, 706
SspMI	CTAG	4 cut(s)	500, 858, 1265, 1281
StuI	AGGCCT	2 cut(s)	483, 1272
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	1 cut(s)	794
TaqI	TCGA	1 cut(s)	635
TfiI	GAWTC	4 cut(s)	523, 577, 952, 967
Tru1I	TTAA	6 cut(s)	17, 269, 434, 702, 767, 827
Tru9I	TTAA	6 cut(s)	17, 269, 434, 702, 767, 827
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	837, 1212
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	93, 652
TspRI	CASTG	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	2 cut(s)	170, 1127
XapI	RAATTY	6 cut(s)	99, 145, 349, 733, 1051, 1231
XbaI	TCTAGA	1 cut(s)	1264
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	186, 1071
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	4 cut(s)	500, 858, 1265, 1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.