Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021333

Physical Location & Seq

Genomic Coordinates Forward (+)

36269641 .. 36269934

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTATGATTCTTTGAAGCTTGTGCTCCTCACTGGAAAGATGCAGGATAGTTTCTTTTTTAGATTTTCTCTTGGTTGGGTAATCACCAATGGTGTTGGTCTTGCATTTTACCCAATTGACATTGTTCGTAGAAGAATGATGATGACTTCTAGTGAAGCCGTCAAATACAAGGGCTCGCTCGATTGCTTCAATCAAATCCTTAAGAATGAGGGTGCAAAGTCCCTCTTCAAGGGTGCTAGTGCAAATATTATTCGTGCAATTGCTGGTGTGCTTGCAGGTTACGACAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

97

Amino Acids

10.81

Weight (kDa)

9.72

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	18 - 89	3.7e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021333)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0123151
rosa_multiflora	Rmu_co8334221.1_g000001 Rmu_sc0005573.1_g000007
rosa_roxburghii	Rroxscaffold_2G00120880
rosa_samantha	Rh2BG310800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	16, 190, 229
AluBI	AGCT	2 cut(s)	19, 289
AluI	AGCT	2 cut(s)	19, 289
Alw21I	GWGCWC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	150, 237
BfrI	CTTAAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	27, 176
BspMI	ACCTGC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	230
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	176, 273
BstENI	CCTNNNNNAGG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	176, 273
CviJI	RGCY	4 cut(s)	19, 158, 174, 289
CviKI_1	RGCY	4 cut(s)	19, 158, 174, 289
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	176
FaiI	YATR	1 cut(s)	6
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	150, 237
HindIII	AAGCTT	2 cut(s)	17, 287
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	76
HpyCH4V	TGCA	6 cut(s)	43, 104, 215, 242, 257, 275
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	18, 29, 249, 261
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	150, 237
MaeIII	GTNAC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	144, 217
MfeI	CAATTG	2 cut(s)	114, 258
MhlI	GDGCHC	2 cut(s)	27, 176
MluCI	AATT	2 cut(s)	114, 258
MnlI	CCTC	3 cut(s)	38, 202, 233
MseI	TTAA	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	200
MunI	CAATTG	2 cut(s)	114, 258
PfeI	GAWTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	27, 176
SetI	ASST	3 cut(s)	21, 280, 291
SfaNI	GCATC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	114, 258
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	150, 237
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	114, 258
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	150, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.