Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005573.1

Orthogroup ID

OG0021333

Physical Location & Seq

Genomic Coordinates Forward (+)

29941 .. 30685

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005573.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgtctcttgctcctagcacaagtactttcgtagaaaaaaatcatagtctagttcatgagattaataaaggtggatgtgttggtgtgaggagctggagcccaccagatcatggtctatttaaattgaattctgatggtccctctaattcacagtttgatagatttgtagttggtgcagtgcttagggatgaacattgtactttgattgtgggagacaactctattgtgtattgcggtctatactttgggatgtatgattctttgaagcttgtgctcctcaccggaaagatgcaggatagtttcttttttagcttttctcttggttgggtaatcaccaatggtgttggtcttgcattttacccaattgacattgttcgtagaagaatgatgatgacttctagtgaagccgtcaaatacaagggctcgctcgattgcttcaatcaaatccttaagaatgagggtgcaaagtccctcttcaagggtgctagtgcaaatattattcgtgcaattgctggtgtgcttgcaggttacgacaagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

180

Amino Acids

19.73

Weight (kDa)

8.67

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021333)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0123151
rosa_multiflora	Rmu_co8334221.1_g000001 Rmu_sc0005573.1_g000007
rosa_roxburghii	Rroxscaffold_2G00120880
rosa_samantha	Rh2BG310800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	2 cut(s)	25, 199
AfiI	CCNNNNNNNGG	2 cut(s)	110, 478
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	4 cut(s)	127, 265, 439, 478
AluBI	AGCT	4 cut(s)	93, 268, 312, 538
AluI	AGCT	4 cut(s)	93, 268, 312, 538
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	9, 207
ApoI	RAATTY	1 cut(s)	127
AseI	ATTAAT	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	271, 325
AvaII	GGWCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	101, 425
Bbv12I	GWGCWC	1 cut(s)	276
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	9, 207
BfaI	CTAG	4 cut(s)	15, 50, 399, 486
BfrI	CTTAAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	515
BmcAI	AGTACT	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	98, 139
BmsI	GCATC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 478
BseGI	GGATG	3 cut(s)	80, 193, 255
BseLI	CCNNNNNNNGG	2 cut(s)	110, 478
BseRI	GAGGAG	2 cut(s)	103, 266
BsgI	GTGCAG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	123, 454
BslI	CCNNNNNNNGG	2 cut(s)	110, 478
BsmAI	GTCTC	2 cut(s)	9, 207
BsmFI	GGGAC	2 cut(s)	123, 454
Bsp1286I	GDGCHC	3 cut(s)	101, 276, 425
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	98, 139
BspMI	ACCTGC	1 cut(s)	515
BspTI	CTTAAG	1 cut(s)	449
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	425, 522
BstDEI	CTNAG	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	80, 193, 255
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	9, 207
BstMBI	GATC	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	80, 193, 255
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	425, 522
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	24, 198
CviAII	CATG	2 cut(s)	56, 110
CviJI	RGCY	7 cut(s)	93, 99, 268, 312, 407, 423, 538
CviKI_1	RGCY	7 cut(s)	93, 99, 268, 312, 407, 423, 538
CviQI	GTAC	2 cut(s)	24, 198
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco24I	GRGCYC	2 cut(s)	101, 425
Eco47I	GGWCC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	127
EcoT38I	GRGCYC	2 cut(s)	101, 425
FaeI	CATG	2 cut(s)	59, 113
FaiI	YATR	5 cut(s)	45, 57, 111, 241, 255
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	2 cut(s)	123, 454
FatI	CATG	2 cut(s)	55, 109
FokI	GGATG	3 cut(s)	87, 200, 262
FriOI	GRGCYC	2 cut(s)	101, 425
FspBI	CTAG	4 cut(s)	15, 50, 399, 486
GsuI	CTGGAG	1 cut(s)	115
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	59, 113
HindIII	AAGCTT	2 cut(s)	266, 536
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	271, 325
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	176, 292, 353, 464, 491, 506, 524
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	59, 113
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	4 cut(s)	16, 90, 96, 279
LpnPI	CCDG	6 cut(s)	79, 117, 278, 295, 498, 510
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	4 cut(s)	15, 50, 399, 486
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	393, 466
MfeI	CAATTG	2 cut(s)	363, 507
MhlI	GDGCHC	3 cut(s)	101, 276, 425
MluCI	AATT	5 cut(s)	122, 127, 145, 363, 507
MnlI	CCTC	5 cut(s)	81, 151, 287, 451, 482
MseI	TTAA	3 cut(s)	63, 120, 450
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	282
MunI	CAATTG	2 cut(s)	363, 507
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	59, 113
NlaIV	GGNNCC	2 cut(s)	98, 139
PagI	TCATGA	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	110
PshBI	ATTAAT	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	98, 139
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	25, 199
RsaNI	GTAC	2 cut(s)	24, 198
SaqAI	TTAA	3 cut(s)	63, 120, 450
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	25
SduI	GDGCHC	3 cut(s)	101, 276, 425
SetI	ASST	6 cut(s)	73, 95, 270, 314, 529, 540
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	137
SmiI	ATTTAAAT	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	5 cut(s)	122, 127, 145, 363, 507
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	4 cut(s)	15, 50, 399, 486
SwaI	ATTTAAAT	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	429
TasI	AATT	5 cut(s)	122, 127, 145, 363, 507
TatI	WGTACW	2 cut(s)	23, 197
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	3 cut(s)	63, 120, 450
Tru9I	TTAA	3 cut(s)	63, 120, 450
TscAI	CASTG	1 cut(s)	183
TspDTI	ATGAA	2 cut(s)	44, 204
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	110
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	4 cut(s)	15, 50, 399, 486
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.