RchiOBHm_Chr2g0124411

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024882
Physical Location & Seq
Reverse (-)
37708827 .. 37709666
840 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49661

Sequence Viewer

Length: 258 bp
ATGGGTTTTCGATTACCTGGAATTGCTAGCACAAAGACATCAGATATCCCAAAAGGCTACTTTGCAGTCTTGTTGGAGAGGAAAGATCCCACATTGGAAAACCAGAAGAAACGATTTGTGGTTCCAATATCATATTTGAACCAACCTTTGTTTCAGGATTTGCTGAAGCTGAAGAAGAATTTGGATACCATCATCCAATGGGCGGTATCACAATTCCTTGCAGTGAAGACACCTTCATTGATCTCACTTCCCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

85

Amino Acids

9.6

Weight (kDa)

9.92

Isoelectric Point (pI)

18.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 59 4.4e-09 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024882)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124411 RchiOBHm_Chr5g0059901 RchiOBHm_Chr7g0210841

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 252
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 185, 191
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 164, 167, 196
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 178
AsuNHI GCTAGC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 178
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 18
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 202
Bsp143I GATC 2 cut(s) 85, 240
BspACI CCGC 2 cut(s) 203, 252
BspLI GGNNCC 1 cut(s) 123
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 80
BssMI GATC 2 cut(s) 85, 240
Bst2UI CCWGG 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 2 cut(s) 88, 243
BstMBI GATC 2 cut(s) 85, 240
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuI GTATCC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 28
CviJI RGCY 2 cut(s) 57, 169
CviKI_1 RGCY 2 cut(s) 57, 169
DpnI GATC 2 cut(s) 87, 242
DpnII GATC 2 cut(s) 85, 240
Eco32I GATATC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 185, 191
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 46
FaiI YATR 1 cut(s) 133
FokI GGATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 65, 221
Kzo9I GATC 2 cut(s) 85, 240
LpnPI CCDG 4 cut(s) 3, 30, 116, 140
MaeI CTAG 1 cut(s) 27
MalI GATC 2 cut(s) 87, 242
MboI GATC 2 cut(s) 85, 240
MboII GAAGA 4 cut(s) 118, 184, 187, 238
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 21, 178, 212
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 1 cut(s) 72
MseI TTAA 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
NdeII GATC 2 cut(s) 85, 240
NheI GCTAGC 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 85
SaqAI TTAA 1 cut(s) 256
Sau3AI GATC 2 cut(s) 85, 240
ScrFI CCNGG 1 cut(s) 18
SetI ASST 4 cut(s) 19, 148, 171, 235
SgeI CNNG 7 cut(s) 29, 30, 39, 82, 115, 167, 230
Sse9I AATT 3 cut(s) 21, 178, 212
SsiI CCGC 2 cut(s) 203, 252
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 21, 178, 212
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 178
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.