RchiOBHm_Chr5g0059901

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0024882
Physical Location & Seq
Reverse (-)
65006065 .. 65006748
684 bp
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UTR
Exon/CDS
Intron
PRQ33647

Sequence Viewer

Length: 459 bp
ATGATTTTCAGTATACCCTTTCATCTATATATACACACATACATGATTAGGTACCTCAACAACTCAACTCTTTTCCTTGCAAGCATCAAAGCTTTATCTGCTACCAACTCCTTATTCTTATCTTCTGCTTCAAGCCTTCAATCACATAAAAATATAGAAACGATGGGTTTCCGATTGCCTGGAATCTCTAACACAAAGAGAAGTCTTACTCCATACCAAACCGTTTCAAAGACATCAGATATCCCAAAAGGCTACTTTGCGGTCTATGTTGGGGAGAGCCAAAAGAAACGATTTGTGGTTCCAATATCATATTTGAACCAACCTTTGTTTCAGGATTTGCTGAGTCAAGCTGAAGAAGAATTCGGATACCATCATCCAATGGGTGGTATCACAATTCCTTGCAGTGAGGACACCTTCCTTGATCTCACTTCCCACCTAAGTGTGTGTCATGAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

152

Amino Acids

17.18

Weight (kDa)

7.09

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 71 - 145 8.6e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0024882)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124411 RchiOBHm_Chr5g0059901 RchiOBHm_Chr7g0210841

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 383
AccI GTMKAC 1 cut(s) 13
AciI CCGC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 4 cut(s) 132, 140, 228, 316
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 312, 344
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 2 cut(s) 92, 350
AluI AGCT 2 cut(s) 92, 350
Alw21I GWGCWC 1 cut(s) 456
ApoI RAATTY 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 456
BccI CCATC 2 cut(s) 157, 378
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 359
BfuI GTATCC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 53, 300
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 53, 300
BspT107I GGYRCC 1 cut(s) 51
BssMI GATC 1 cut(s) 421
BssNAI GTATAC 1 cut(s) 14
Bst1107I GTATAC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 341, 437
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 424
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 14
BsuI GTATCC 1 cut(s) 359
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 448
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 43, 449
CviJI RGCY 5 cut(s) 92, 135, 252, 279, 350
CviKI_1 RGCY 5 cut(s) 92, 135, 252, 279, 350
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 341, 437
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 241
FaeI CATG 2 cut(s) 46, 452
FatI CATG 2 cut(s) 42, 448
FblI GTMKAC 1 cut(s) 13
FokI GGATG 1 cut(s) 360
Hin1II CATG 2 cut(s) 46, 452
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 2 cut(s) 183, 343
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 3 cut(s) 173, 238, 365
Hpy188III TCNNGA 2 cut(s) 332, 449
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 146, 424
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 80, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 341, 437
Hsp92II CATG 2 cut(s) 46, 452
KpnI GGTACC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 421
LpnPI CCDG 3 cut(s) 165, 192, 317
LweI GCATC 1 cut(s) 93
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 3 cut(s) 114, 365, 368
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 2 cut(s) 359, 393
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 2 cut(s) 65, 400
MslI CAYNNNNRTG 2 cut(s) 41, 438
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 421
NlaIII CATG 2 cut(s) 46, 452
NlaIV GGNNCC 2 cut(s) 53, 300
OliI CACNNNNGTG 1 cut(s) 438
PagI TCATGA 1 cut(s) 448
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 383
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 53, 300
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 41, 438
Sau3AI GATC 1 cut(s) 421
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 456
SetI ASST 7 cut(s) 53, 57, 94, 325, 352, 416, 438
SfaNI GCATC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 41, 438
Sse9I AATT 2 cut(s) 359, 393
SsiI CCGC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 223
TasI AATT 2 cut(s) 359, 393
TfiI GAWTC 1 cut(s) 183
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 11
TspRI CASTG 1 cut(s) 409
Van91I CCANNNNNTGG 1 cut(s) 383
XapI RAATTY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.