RchiOBHm_Chr2g0135371

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
52426550 .. 52427809
1260 bp
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UTR
Exon/CDS
Intron
PRQ50628

Sequence Viewer

Length: 1179 bp
ATGGAACATATAGTGAATGAACTGCAAAGCCAAAGCATAGTCTCCGTGGTTGGGATGGGAGGATCTGGGAAGACCACTCTTGTTGCAAAGATCTTTAACATTGACATTGTAAAGAGACATTTCAATTGCTATGCATGGATTACAGTTACCCAAACCTATGTGATTGAGGACTTATTTAGAAGCTTGATCAAGCAATTCCATGAAGCAAGGAAGGAGGAGGTTCTAAGAGACATTGATATGATGAGCTTTAGAGAATTGGTAGAGATTCTTGTGAACTTCTTGAACTCAAAAAAGTATCTAGTTGTGCTGGATGATGTATGGGATATAAATCTTTGGGCACAAATAAGGGTATCACTTCAACATAGACAACTTGGAAGTCGAGTTGTACTCACCACTCGAAATGATGATATAGCAAGCTATGCTTTTGGAGTTGCAAGCCATGTTCACCATATTCAACCCCTGGGAAAGAAGAACACTTGGGAGCTTTTTTGCAAGGAGACATTCTCTACTCATCCTATTAAATCTTGTCCACTTGAACTTGAACCATTTGCTCGGGAACTTGTGGGGAAGTGTAATGGCTTTCCTCTAGCAATTGTAGCATTAGGTGGTCTCATGTCATCCAAAAAGTCACGTTCAGAGTGGAGCAATGTTTGCAACAGCTTAAATTGGCATCTTAGAAACGTCCCTTTACTGGGCTCTATGCAGAGCATTTTATTGCTCAATTTCAATGACTTATTGTGGATAGCTGAAGGATTCGTTGAACATGTGAAAGGTGTCACACTGGAAGTGATTGTAGATAGATATCTTTCGGAACTTTGTTTTAGTAGCATGCTACAAGTTGTGGAGAGGAATGAAGAAGGAAGGCCAAAACAATGCAGGATGCATGATGTCATGCGTGAGCTTGCTCTTTCAACATCTGAGAAAGAAAAGTTTTGTGCTGTGTATGATGGGAAAGATGAAGCAATTGAAGCCCGCCGTTTGTCATTTCAATTTGAAAGAGAAATTAAATCCAGCACAGGTATATCACAGCTTCGATCTATTCTTGTCTTTGTCAAAGAGACTACGTTGCCTTCTGATTGCAAATTTTTGAGGGTGCTAGACTTGGCGGAGAATATGTCAATAACTAAACTGCTAGATGATCTTGGGTACTTGTTCAACTTAAGATATATATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

392

Amino Acids

45.08

Weight (kDa)

6.61

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 169 1e-43 NB-ARC domain
AAA_16 PF13191 11 - 106 9e-06 AAA ATPase domain
WHD_DRP PF23559 246 - 302 7.7e-14 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022685)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0135371
rosa_multiflora Rmu_ssc0000187.1_g000021
rosa_samantha Rh2BG381600 Rh2DG397900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 973, 1106
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 1082
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 2 cut(s) 387, 1148
AfiI CCNNNNNNNGG 3 cut(s) 51, 691, 692
AflII CTTAAG 1 cut(s) 1159
AflIII ACRYGT 1 cut(s) 763
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 8 cut(s) 183, 246, 417, 484, 660, 746, 901, 1030
AluI AGCT 8 cut(s) 183, 246, 417, 484, 660, 746, 901, 1030
Alw26I GTCTC 6 cut(s) 46, 109, 222, 491, 614, 1052
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 1 cut(s) 863
ApoI RAATTY 1 cut(s) 1082
AsuHPI GGTGA 2 cut(s) 382, 437
AvaI CYCGRG 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 2 cut(s) 49, 941
BceAI ACGGC 1 cut(s) 960
BciT130I CCWGG 1 cut(s) 461
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 6 cut(s) 46, 109, 222, 491, 614, 1052
BfaI CTAG 4 cut(s) 299, 587, 1097, 1133
BfrI CTTAAG 1 cut(s) 1159
BglII AGATCT 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 2 cut(s) 679, 870
BmuI ACTGGG 1 cut(s) 701
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 4 cut(s) 372, 404, 488, 520
BsaBI GATNNNNATC 2 cut(s) 327, 801
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 45, 459, 460
BsaXI ACNNNNNCTCC 2 cut(s) 1100, 1130
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 691, 692
Bse1I ACTGG 2 cut(s) 696, 786
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 2 cut(s) 327, 801
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 45, 459, 460
BseGI GGATG 5 cut(s) 60, 316, 511, 617, 885
BseJI GATNNNNATC 2 cut(s) 327, 801
BseLI CCNNNNNNNGG 3 cut(s) 51, 691, 692
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 2 cut(s) 696, 786
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 340
BshFI GGCC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 3 cut(s) 51, 691, 692
BsmAI GTCTC 6 cut(s) 46, 109, 222, 491, 614, 1052
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 1 cut(s) 865
Bso31I GGTCTC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 340, 698
Bsp143I GATC 5 cut(s) 62, 90, 186, 1034, 1138
BspACI CCGC 2 cut(s) 973, 1106
BspANI GGCC 1 cut(s) 865
BspCNI CTCAG 1 cut(s) 910
BspPI GGATC 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 1159
BspTNI GGTCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 2 cut(s) 696, 786
BssECI CCNNGG 3 cut(s) 45, 459, 460
BssMI GATC 5 cut(s) 62, 90, 186, 1034, 1138
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 145
BstAFI CTTAAG 1 cut(s) 1159
BstAPI GCANNNNNTGC 2 cut(s) 419, 651
BstC8I GCNNGC 5 cut(s) 415, 436, 830, 903, 973
BstDEI CTNAG 3 cut(s) 224, 674, 918
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 5 cut(s) 60, 316, 511, 617, 885
BstKTI GATC 5 cut(s) 65, 93, 189, 1037, 1141
BstMAI GTCTC 6 cut(s) 46, 109, 222, 491, 614, 1052
BstMBI GATC 5 cut(s) 62, 90, 186, 1034, 1138
BstMWI GCNNNNNNNGC 4 cut(s) 419, 596, 651, 968
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 2 cut(s) 767, 832
BstSCI CCNGG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 62, 90
BstYI RGATCY 2 cut(s) 62, 90
BsuRI GGCC 1 cut(s) 865
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 5 cut(s) 60, 316, 511, 617, 885
BtsIMutI CAGTG 1 cut(s) 779
Cac8I GCNNGC 5 cut(s) 415, 436, 830, 903, 973
Csp6I GTAC 2 cut(s) 386, 1147
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 8 cut(s) 135, 200, 440, 613, 764, 829, 884, 892
CviQI GTAC 2 cut(s) 386, 1147
DdeI CTNAG 3 cut(s) 224, 674, 918
DpnI GATC 5 cut(s) 64, 92, 188, 1036, 1140
DpnII GATC 5 cut(s) 62, 90, 186, 1034, 1138
EciI GGCGGA 1 cut(s) 1121
Eco24I GRGCYC 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 614
Eco32I GATATC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 803
EcoT22I ATGCAT 2 cut(s) 136, 885
EcoT38I GRGCYC 1 cut(s) 698
FaeI CATG 8 cut(s) 138, 203, 443, 616, 767, 832, 887, 895
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 1 cut(s) 668
FatI CATG 8 cut(s) 134, 199, 439, 612, 763, 828, 883, 891
FauI CCCGC 1 cut(s) 980
FbaI TGATCA 1 cut(s) 186
FokI GGATG 5 cut(s) 67, 323, 498, 604, 892
FriOI GRGCYC 1 cut(s) 698
FspBI CTAG 4 cut(s) 299, 587, 1097, 1133
HaeIII GGCC 1 cut(s) 865
Hin1II CATG 8 cut(s) 138, 203, 443, 616, 767, 832, 887, 895
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 265, 753
HphI GGTGA 2 cut(s) 382, 437
Hpy166II GTNNAC 3 cut(s) 274, 445, 530
Hpy188I TCNGA 4 cut(s) 637, 811, 919, 1075
Hpy188III TCNNGA 2 cut(s) 280, 554
Hpy8I GTNNAC 3 cut(s) 274, 445, 530
HpyAV CCTTC 5 cut(s) 205, 743, 851, 855, 1080
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 631, 681, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 596, 651, 968
HpyF3I CTNAG 3 cut(s) 224, 674, 918
HpySE526I ACGT 3 cut(s) 631, 681, 1064
Hsp92II CATG 8 cut(s) 138, 203, 443, 616, 767, 832, 887, 895
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 5 cut(s) 62, 90, 186, 1034, 1138
LmnI GCTCC 2 cut(s) 481, 642
LpnPI CCDG 9 cut(s) 51, 293, 446, 473, 677, 767, 862, 1002, 1024
LweI GCATC 2 cut(s) 679, 870
MaeI CTAG 4 cut(s) 299, 587, 1097, 1133
MaeII ACGT 3 cut(s) 631, 681, 1064
MaeIII GTNAC 3 cut(s) 145, 627, 775
MalI GATC 5 cut(s) 64, 92, 188, 1036, 1140
MboI GATC 5 cut(s) 62, 90, 186, 1034, 1138
MboII GAAGA 3 cut(s) 82, 481, 866
MfeI CAATTG 3 cut(s) 124, 591, 963
MflI RGATCY 2 cut(s) 62, 90
MhlI GDGCHC 2 cut(s) 340, 698
MnlI CCTC 7 cut(s) 53, 160, 208, 211, 594, 840, 1083
Mph1103I ATGCAT 2 cut(s) 136, 885
MseI TTAA 5 cut(s) 96, 519, 662, 1005, 1160
MslI CAYNNNNRTG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 1159
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 3 cut(s) 124, 591, 963
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 4 cut(s) 419, 596, 651, 968
NdeII GATC 5 cut(s) 62, 90, 186, 1034, 1138
NlaIII CATG 8 cut(s) 138, 203, 443, 616, 767, 832, 887, 895
NmuCI GTSAC 2 cut(s) 627, 775
NsiI ATGCAT 2 cut(s) 136, 885
NspI RCATGY 2 cut(s) 767, 832
PaeI GCATGC 1 cut(s) 832
PasI CCCWGGG 1 cut(s) 460
PciI ACATGT 1 cut(s) 763
PfeI GAWTC 2 cut(s) 265, 753
PscI ACATGT 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PsuI RGATCY 2 cut(s) 62, 90
RsaI GTAC 2 cut(s) 387, 1148
RsaNI GTAC 2 cut(s) 386, 1147
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 5 cut(s) 96, 519, 662, 1005, 1160
Sau3AI GATC 5 cut(s) 62, 90, 186, 1034, 1138
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 340, 698
SfaNI GCATC 2 cut(s) 679, 870
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
SphI GCATGC 1 cut(s) 832
SsiI CCGC 2 cut(s) 973, 1106
SspMI CTAG 4 cut(s) 299, 587, 1097, 1133
StyD4I CCNGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 3 cut(s) 634, 684, 1067
TaqI TCGA 3 cut(s) 379, 397, 1033
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 2 cut(s) 265, 753
Tru1I TTAA 5 cut(s) 96, 519, 662, 1005, 1160
Tru9I TTAA 5 cut(s) 96, 519, 662, 1005, 1160
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 2 cut(s) 627, 775
Tsp45I GTSAC 2 cut(s) 627, 775
TspDTI ATGAA 4 cut(s) 33, 216, 867, 972
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 786
Vha464I CTTAAG 1 cut(s) 1159
XapI RAATTY 1 cut(s) 1082
XceI RCATGY 2 cut(s) 767, 832
XspI CTAG 4 cut(s) 299, 587, 1097, 1133
Zsp2I ATGCAT 2 cut(s) 136, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.