Rh2DG397900

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0022685
Physical Location & Seq
Forward (+)
57880509 .. 57881066
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG397900.1

Sequence Viewer

Length: 558 bp
ATGCTACAAGTTGTGGAGAGGAATGAAGAAGGAAGGCCAAAACAATGCAGGATGCATGATGTCATGAGTGAGCTTGCTCTTTCAACATCTGAGAAAGAAAAGTTTTGTGCTGTGTATGATGGGAAAGATGAAGCAATTGAAGCCCGCCGTTTGTCATTTCAATTTGAAGGAGAAATTAAATCCAGCACAGGTATATCACAACTTCGATCTATTCTTGTCTTTGTCAAAGAGACTACGTTGCCTTCTGATTGCAAATTTTTGAGGGTGCTAGACTTGGCGGAGAATATGTCAATAACTAAACTGCTAGATGATCTTGGGTACTTGTTCAACTTAAGATATATAAATTTGAGGAGAACTCGTATCAAGGAGCTTCCAAAATCCATAGGAAAGCTACGCAACCATCAAACCTTGAACATCCGCGAAAGTAAGATAAAGGAACTTCCAAAAGAAATTGCCAAGTTGTTAAATCTGCGCCATCTAATTATGTACCATTACACTGATGATTTTCTTGGGTTTAGATTTGTCAAGGGGACAAGAGTACCAGTGGATCTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

185

Amino Acids

21.58

Weight (kDa)

9.24

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 67 - 166 1.1e-23 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022685)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0135371
rosa_multiflora Rmu_ssc0000187.1_g000021
rosa_samantha Rh2BG381600 Rh2DG397900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 420
AciI CCGC 3 cut(s) 145, 278, 418
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 2 cut(s) 254, 343
AfaI GTAC 3 cut(s) 320, 488, 540
AflII CTTAAG 1 cut(s) 331
AgsI TTSAA 6 cut(s) 84, 140, 161, 167, 328, 412
AluBI AGCT 3 cut(s) 73, 370, 391
AluI AGCT 3 cut(s) 73, 370, 391
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 555
AoxI GGCC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 254, 343
AspLEI GCGC 1 cut(s) 474
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BccI CCATC 3 cut(s) 113, 408, 483
BceAI ACGGC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 269, 305
BfrI CTTAAG 1 cut(s) 331
BmsI GCATC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 343, 373
Bse1I ACTGG 1 cut(s) 542
BseGI GGATG 2 cut(s) 57, 414
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 37
BslFI GGGAC 1 cut(s) 544
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 544
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 206, 310, 547
BspACI CCGC 3 cut(s) 145, 278, 418
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 420
BspHI TCATGA 1 cut(s) 63
BspPI GGATC 1 cut(s) 555
BspTI CTTAAG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 542
BssMI GATC 3 cut(s) 206, 310, 547
BstAFI CTTAAG 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 75, 145
BstDEI CTNAG 2 cut(s) 90, 551
BstF5I GGATG 2 cut(s) 57, 414
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 3 cut(s) 209, 313, 550
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 206, 310, 547
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstUI CGCG 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 57, 414
BtsIMutI CAGTG 2 cut(s) 495, 549
Cac8I GCNNGC 2 cut(s) 75, 145
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 319, 487, 539
CviAII CATG 2 cut(s) 56, 64
CviJI RGCY 5 cut(s) 37, 73, 143, 370, 391
CviKI_1 RGCY 5 cut(s) 37, 73, 143, 370, 391
CviQI GTAC 3 cut(s) 319, 487, 539
DdeI CTNAG 2 cut(s) 90, 551
DpnI GATC 3 cut(s) 208, 312, 549
DpnII GATC 3 cut(s) 206, 310, 547
EciI GGCGGA 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 57
FaeI CATG 2 cut(s) 59, 67
FaiI YATR 9 cut(s) 57, 65, 117, 194, 287, 339, 341, 383, 485
FaqI GGGAC 1 cut(s) 544
FatI CATG 2 cut(s) 55, 63
FauI CCCGC 1 cut(s) 152
FokI GGATG 2 cut(s) 64, 401
FspBI CTAG 2 cut(s) 269, 305
GlaI GCGC 1 cut(s) 473
HaeIII GGCC 1 cut(s) 37
HhaI GCGC 1 cut(s) 474
Hin1II CATG 2 cut(s) 59, 67
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 91, 247
Hpy188III TCNNGA 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 23, 27, 161, 252
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 48, 55, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 90, 551
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 2 cut(s) 59, 67
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 206, 310, 547
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 3 cut(s) 34, 174, 196
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 269, 305
MaeII ACGT 1 cut(s) 236
MalI GATC 3 cut(s) 208, 312, 549
MboI GATC 3 cut(s) 206, 310, 547
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 547
MluCI AATT 7 cut(s) 135, 161, 174, 254, 343, 450, 480
MnlI CCTC 3 cut(s) 12, 255, 342
Mph1103I ATGCAT 1 cut(s) 57
MseI TTAA 3 cut(s) 177, 332, 464
MspCI CTTAAG 1 cut(s) 331
MunI CAATTG 1 cut(s) 135
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 3 cut(s) 206, 310, 547
NlaIII CATG 2 cut(s) 59, 67
NsiI ATGCAT 1 cut(s) 57
PagI TCATGA 1 cut(s) 63
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 3 cut(s) 320, 488, 540
RsaNI GTAC 3 cut(s) 319, 487, 539
SaqAI TTAA 3 cut(s) 177, 332, 464
Sau3AI GATC 3 cut(s) 206, 310, 547
SetI ASST 6 cut(s) 75, 193, 239, 372, 393, 410
SfaNI GCATC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 7 cut(s) 135, 161, 174, 254, 343, 450, 480
SsiI CCGC 3 cut(s) 145, 278, 418
SspMI CTAG 2 cut(s) 269, 305
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 205
TasI AATT 7 cut(s) 135, 161, 174, 254, 343, 450, 480
Tru1I TTAA 3 cut(s) 177, 332, 464
Tru9I TTAA 3 cut(s) 177, 332, 464
TscAI CASTG 2 cut(s) 502, 549
TspDTI ATGAA 2 cut(s) 39, 144
TspRI CASTG 2 cut(s) 502, 549
Vha464I CTTAAG 1 cut(s) 331
XapI RAATTY 2 cut(s) 254, 343
XspI CTAG 2 cut(s) 269, 305
Zsp2I ATGCAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.