Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021344

Physical Location & Seq

Genomic Coordinates Reverse (-)

58931047 .. 58934988

Gene Structure 3942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGATCATATCTGGTTCGAGGTTCTTTAGCTCGTGCTACAGGGAGCACAAACATGAACAGTCAGTCAAGTTGCTCACATGCTATATTTACAATAACCATGGAGCAAAAGAAGATTTCTCACTGTCTGAATGGAGCAAAGAATGATTATATCGGTGATGACATACTATGTGCAAAACTCCATCTAGTTGACCTAGCAGGTTCTGAGCGGGCAAAACGAACAGGTGCAGATGGCATGCACTTGAAAGAAGTACATGGTGACACGCATATTCTAGACATTGCTGTGGATTTGCCTTCTGTGACTGAAATTTTCGGGTCAAAATATTCAACTACTCTTCTCTGCACTCGATTAAGATGTCAGATCAACAGACCGGCCTCCGATCACTTTATCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAGTTGATTGGGTATGCTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

153

Amino Acids

16.94

Weight (kDa)

6.63

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	4 - 84	1.2e-17	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021344)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141361 RchiOBHm_Chr4g0404791 RchiOBHm_Chr6g0247721
rosa_samantha	Rh1AG155600 Rh5CG368400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	244, 327
AluBI	AGCT	2 cut(s)	32, 435
AluI	AGCT	2 cut(s)	32, 435
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	167, 269
BauI	CACGAG	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	50
BccI	CCATC	2 cut(s)	189, 224
BfaI	CTAG	3 cut(s)	185, 194, 272
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	195, 450
BseYI	CCCAGC	1 cut(s)	453
BsgI	GTGCAG	2 cut(s)	246, 325
BshFI	GGCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	371
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	5, 360, 379
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	196, 449
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	5, 360, 379
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	62, 125
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	210, 236
BstDEI	CTNAG	2 cut(s)	204, 436
BstDSI	CCRYGG	1 cut(s)	99
BstKTI	GATC	3 cut(s)	8, 363, 382
BstMBI	GATC	3 cut(s)	5, 360, 379
BstNSI	RCATGY	2 cut(s)	83, 238
BstSFI	CTRYAG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	210, 236
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	5 cut(s)	55, 80, 100, 235, 254
CviJI	RGCY	3 cut(s)	32, 374, 435
CviKI_1	RGCY	3 cut(s)	32, 374, 435
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	204, 436
DpnI	GATC	3 cut(s)	7, 362, 381
DpnII	GATC	3 cut(s)	5, 360, 379
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	58, 83, 103, 238, 257
FatI	CATG	5 cut(s)	54, 79, 99, 234, 253
FauI	CCCGC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	419
FspBI	CTAG	3 cut(s)	185, 194, 272
GsaI	CCCAGC	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	5 cut(s)	58, 83, 103, 238, 257
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	167, 269
Hpy166II	GTNNAC	2 cut(s)	190, 420
Hpy188I	TCNGA	4 cut(s)	129, 205, 360, 379
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	190, 420
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	2 cut(s)	62, 125
HpyCH4V	TGCA	4 cut(s)	173, 227, 238, 342
HpyF3I	CTNAG	2 cut(s)	204, 436
Hsp92II	CATG	5 cut(s)	58, 83, 103, 238, 257
Kzo9I	GATC	3 cut(s)	5, 360, 379
LmnI	GCTCC	3 cut(s)	45, 103, 134
LpnPI	CCDG	5 cut(s)	27, 183, 207, 384, 439
MaeI	CTAG	3 cut(s)	185, 194, 272
MaeIII	GTNAC	2 cut(s)	257, 298
MalI	GATC	3 cut(s)	7, 362, 381
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	3 cut(s)	5, 360, 379
MboII	GAAGA	3 cut(s)	124, 326, 398
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	1 cut(s)	306
MnlI	CCTC	2 cut(s)	14, 385
MseI	TTAA	2 cut(s)	350, 460
MslI	CAYNNNNRTG	2 cut(s)	53, 281
MspI	CCGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	5, 360, 379
NlaIII	CATG	5 cut(s)	58, 83, 103, 238, 257
NmuCI	GTSAC	2 cut(s)	257, 298
NspI	RCATGY	2 cut(s)	83, 238
PaeI	GCATGC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	53, 281
SaqAI	TTAA	2 cut(s)	350, 460
Sau3AI	GATC	3 cut(s)	5, 360, 379
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	6 cut(s)	25, 34, 195, 202, 226, 437
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	53, 281
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	323
SspMI	CTAG	3 cut(s)	185, 194, 272
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	62, 125
TaqI	TCGA	2 cut(s)	19, 346
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	350, 460
Tru9I	TTAA	2 cut(s)	350, 460
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	257, 298
Tsp45I	GTSAC	2 cut(s)	257, 298
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	306
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	2 cut(s)	83, 238
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	3 cut(s)	185, 194, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.