Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0021344

Physical Location & Seq

Genomic Coordinates Reverse (-)

29102840 .. 29103851

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG155600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCATATTCTAGACATTGCTGTGGATTTGCCTTCTGTGACTGAAATTTTAGGGTCAAAATATTCAACTACTCTTCTCTGCACTCGATTAAGATGTCAGATCAACAGACCGGCCTCGTTCACTTTATCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAGTTGATTGGGTATGCTGGGATTAATTACAGCTCTCCTACTCTTGGCACGGCTATGTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATATTCAGAATGGAAAAAATTGATCGGAGAAGCTGCAGTACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

7.65

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021344)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141361 RchiOBHm_Chr4g0404791 RchiOBHm_Chr6g0247721
rosa_samantha	Rh1AG155600 Rh5CG368400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	2 cut(s)	260, 309
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	66
AluBI	AGCT	4 cut(s)	173, 207, 247, 302
AluI	AGCT	4 cut(s)	173, 207, 247, 302
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	45
AseI	ATTAAT	1 cut(s)	198
BarI	GAAGNNNNNNTAC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	11, 313
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	218
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	99, 291
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	2 cut(s)	99, 291
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	102, 294
BstMBI	GATC	2 cut(s)	99, 291
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	259, 308
CviJI	RGCY	6 cut(s)	113, 173, 207, 227, 247, 302
CviKI_1	RGCY	6 cut(s)	113, 173, 207, 227, 247, 302
CviQI	GTAC	2 cut(s)	259, 308
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	101, 293
DpnII	GATC	2 cut(s)	99, 291
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	5 cut(s)	6, 170, 189, 230, 271
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	11, 313
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	120, 158, 234
Hpy188I	TCNGA	3 cut(s)	99, 277, 296
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	3 cut(s)	120, 158, 234
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	4, 81, 265, 305
HpyF3I	CTNAG	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	99, 291
LpnPI	CCDG	3 cut(s)	123, 177, 257
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	11, 313
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	101, 293
MboI	GATC	2 cut(s)	99, 291
MboII	GAAGA	2 cut(s)	65, 136
MluCI	AATT	3 cut(s)	45, 199, 287
MnlI	CCTC	1 cut(s)	124
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	89, 198
MslI	CAYNNNNRTG	2 cut(s)	20, 227
MspI	CCGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	99, 291
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	307
RsaI	GTAC	2 cut(s)	260, 309
RsaNI	GTAC	2 cut(s)	259, 308
RseI	CAYNNNNRTG	2 cut(s)	20, 227
SaqAI	TTAA	2 cut(s)	89, 198
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	99, 291
SetI	ASST	5 cut(s)	175, 209, 239, 249, 304
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	20, 227
Sse9I	AATT	3 cut(s)	45, 199, 287
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	2 cut(s)	11, 313
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	45, 199, 287
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	89, 198
Tru9I	TTAA	2 cut(s)	89, 198
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	1 cut(s)	45
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	2 cut(s)	11, 313
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.